Molecular phylogeny based on the -casein and cytochrome b sequences in the mammalian suborder Ruminantia

作者: Koichi Chikuni , Yutaka Mori , Toshiyuki Tabata , Masayoshi Saito , Michiko Monma

DOI: 10.1007/BF00173165

关键词: Phylogenetic treeRuminantiaGeneticsSerowBiologyCaprinaeCytochrome bDeer mouseJapanese serowMolecular phylogenetics

摘要: Nucleotide sequences for the κ-casein precursor proteins have been determined from genomic DNAs or hair roots of Ruminantia. The coding regions, exons 2, 3, and 4, were amplified separately via three kinds PCRs then directly sequenced. primers designed sequence bovine gene; they applicable amplification genes 13 species in Ruminantia except exon 2 lesser mouse deer. These results permitted an easy phylogenetic analysis based on autosomal gene. A tree was constructed mature K-casein compared with cytochrome b which sequenced same individuals. Cervidae (sika deer, Cervus nippon) separated branch Bovidae a relatively high confidence level bootstrap analysis, but included genes. indicated monophyly subfamily Caprinae, although internal branches uncertain Caprinae. nucleotide clearly showed relationships closely related genus Capricornis consisting serow (C. smatorensis), Japanese crispus), Formosan swinhoei). would be explained by difference resolving power between sequences.

参考文章(30)
Michael J. Novacek, Information for Molecular Studies from Anatomical and Fossil Evidence on Higher Eutherian Phylogeny Macromolecular Sequences in Systematic and Evolutionary Biology. pp. 3- 41 ,(1982) , 10.1007/978-1-4684-4283-0_1
Masatoshi Nei, Molecular Evolutionary Genetics ,(1987)
David M Irwin, Thomas D Kocher, Allan C Wilson, None, Evolution of the cytochrome b gene of mammals. Journal of Molecular Evolution. ,vol. 32, pp. 128- 144 ,(1991) , 10.1007/BF02515385
Paul Desjardins, Réjean Morais, Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates. Journal of Molecular Biology. ,vol. 212, pp. 599- 634 ,(1990) , 10.1016/0022-2836(90)90225-B
Leeson J. ALEXANDER, A. Francis STEWART, Antony G. MACKINLAY, Tatiana V. KAPELINSKAYA, Tatiana M. TKACH, Stanislav I. GORODETSKY, Isolation and characterization of the bovine k‐casein gene FEBS Journal. ,vol. 178, pp. 395- 401 ,(1988) , 10.1111/J.1432-1033.1988.TB14463.X
W. M. Brown, M. George, A. C. Wilson, Rapid evolution of animal mitochondrial DNA. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 76, pp. 1967- 1971 ,(1979) , 10.1073/PNAS.76.4.1967
Takashi Gojobori, Kazushige Ishii, Masatoshi Nei, Estimation of average number of nucleotide substitutions when the rate of substitution varies with nucleotide. Journal of Molecular Evolution. ,vol. 18, pp. 414- 422 ,(1982) , 10.1007/BF01840889
J.P. Furet, J.C. Mercier, S. Soulier, P. Gaye, D. Hue-Delahaie, J.L. Vilotte, Nucleotide sequence of ovine ϰ-casein cDNA Nucleic Acids Research. ,vol. 18, pp. 5286- 5286 ,(1990) , 10.1093/NAR/18.17.5286
S. Anderson, M.H.L. de Bruijn, A.R. Coulson, I.C. Eperon, F. Sanger, I.G. Young, Complete sequence of bovine mitochondrial DNA conserved features of the mammalian mitochondrial genome Journal of Molecular Biology. ,vol. 156, pp. 683- 717 ,(1982) , 10.1016/0022-2836(82)90137-1