Single-Molecule Studies in Live Cells

作者: Ji Yu

DOI: 10.1146/ANNUREV-PHYSCHEM-040215-112451

关键词: BiophysicsSingle-particle trackingBiological studiesOptical imagingCell survivalComputational biologyComputer scienceLive cell imaging

摘要: Live-cell single-molecule experiments are now widely used to study complex biological processes such as signal transduction, self-assembly, active trafficking, and gene regulation. These experiments' increased popularity results in part from rapid methodological developments that have significantly lowered the technical barriers performing them. Another important advance is development of novel statistical algorithms, which, by modeling stochastic behaviors single molecules, can be extract systemic parameters describing vivo biochemistry or super-resolution localization molecules within their physiological environment. This review discusses recent advances experimental computational strategies for live-cell studies, well a selected subset studies utilized these new technologies.

参考文章(124)
Arnaud Gautier, Alexandre Juillerat, Christian Heinis, Ivan Reis Corrêa, Maik Kindermann, Florent Beaufils, Kai Johnsson, An Engineered Protein Tag for Multiprotein Labeling in Living Cells Chemistry & Biology. ,vol. 15, pp. 128- 136 ,(2008) , 10.1016/J.CHEMBIOL.2008.01.007
S.-H. Shim, C. Xia, G. Zhong, H. P. Babcock, J. C. Vaughan, B. Huang, X. Wang, C. Xu, G.-Q. Bi, X. Zhuang, Super-resolution fluorescence imaging of organelles in live cells with photoswitchable membrane probes. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 109, pp. 13978- 13983 ,(2012) , 10.1073/PNAS.1201882109
Andrew J. Berglund, Statistics of camera-based single-particle tracking Physical Review E. ,vol. 82, pp. 011917- 011917 ,(2010) , 10.1103/PHYSREVE.82.011917
Russell E. Thompson, Daniel R. Larson, Watt W. Webb, Precise Nanometer Localization Analysis for Individual Fluorescent Probes Biophysical Journal. ,vol. 82, pp. 2775- 2783 ,(2002) , 10.1016/S0006-3495(02)75618-X
E. M. Puchner, J. M. Walter, R. Kasper, B. Huang, W. A. Lim, Counting molecules in single organelles with superresolution microscopy allows tracking of the endosome maturation trajectory Proceedings of the National Academy of Sciences of the United States of America. ,vol. 110, pp. 16015- 16020 ,(2013) , 10.1073/PNAS.1309676110
Hazen P. Babcock, Jeffrey R. Moffitt, Yunlong Cao, Xiaowei Zhuang, Fast compressed sensing analysis for super-resolution imaging using L1-homotopy. Optics Express. ,vol. 21, pp. 28583- 28596 ,(2013) , 10.1364/OE.21.028583
Hari Shroff, Catherine G Galbraith, James A Galbraith, Eric Betzig, Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics Nature Methods. ,vol. 5, pp. 417- 423 ,(2008) , 10.1038/NMETH.1202
M.J. Saxton, Lateral diffusion in an archipelago : single-particle diffusion Biophysical Journal. ,vol. 64, pp. 1766- 1780 ,(1993) , 10.1016/S0006-3495(93)81548-0