Measuring rDNA Diversity in Eukaryotic Microbial Systems: How Intragenomic Variation, Pseudogenes, and PCR Artifacts Confound Biodiversity Estimates
作者： DANIEL J. THORNHILL , TODD C. LAJEUNESSE , SCOTT R. SANTOS
DOI: 10.1111/J.1365-294X.2007.03576.X
关键词: Pseudogene 、 Internal transcribed spacer 、 Phylogenetics 、 Gene 、 Biology 、 Sequence alignment 、 Genetic marker 、 Genetics 、 Symbiodinium 、 Cloning
摘要: … number of variants attributed to Taq polymerase/bacterial cloning error or PCR chimeras. Analyses of 5.8S-rDNA and ITS2 secondary structure revealed that some variants possessed …
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Robert W. Buddemeier, Daphne G. Fautin, Coral Bleaching as an Adaptive Mechanism BioScience. ,vol. 43, pp. 320- 326 ,(1993) , 10.2307/1312064
Andrew J. Alverson, Leanne Kolnick, INTRAGENOMIC NUCLEOTIDE POLYMORPHISM AMONG SMALL SUBUNIT (18S) RDNA PARALOGS IN THE DIATOM GENUS SKELETONEMA (BACILLARIOPHYTA) Journal of Phycology. ,vol. 41, pp. 1248- 1257 ,(2005) , 10.1111/J.1529-8817.2005.00136.X
Y. Henry, H. Wood, J.P. Morrissey, E. Petfalski, S. Kearsey, D. Tollervey, The 5' end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site. The EMBO Journal. ,vol. 13, pp. 2452- 2463 ,(1994) , 10.1002/J.1460-2075.1994.TB06530.X
M. Beltrame, D. Tollervey, Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA. The EMBO Journal. ,vol. 11, pp. 1531- 1542 ,(1992) , 10.1002/J.1460-2075.1992.TB05198.X
James A. Coyer, G. Jason Smith, Robert A. Andersen, EVOLUTION OF MACROCYSTIS SPP. (PHAEOPHYCEAE) AS DETERMINED BY ITS1 AND ITS2 SEQUENCES1, Journal of Phycology. ,vol. 37, pp. 574- 585 ,(2001) , 10.1046/J.1529-8817.2001.037001574.X
Andrew C. Baker, Craig J. Starger, Tim R. McClanahan, Peter W. Glynn, Corals' adaptive response to climate change Nature. ,vol. 430, pp. 741- 741 ,(2004) , 10.1038/430741A
Carine A.F.M. van der Sande, Marcel Kwa, Rob W. van Nues, Harm van Heerikhuizen, Hendrik A. Raué, Rudi J. Planta, Functional analysis of internal transcribed spacer 2 of Saccharomyces cerevisiae ribosomal DNA. Journal of Molecular Biology. ,vol. 223, pp. 899- 910 ,(1992) , 10.1016/0022-2836(92)90251-E
David M. Hillis, Michael T. Dixon, Ribosomal DNA: molecular evolution and phylogenetic inference. The Quarterly Review of Biology. ,vol. 66, pp. 411- 453 ,(1991) , 10.1086/417338
Annette W. Coleman, ITS2 is a double-edged tool for eukaryote evolutionary comparisons Trends in Genetics. ,vol. 19, pp. 370- 375 ,(2003) , 10.1016/S0168-9525(03)00118-5
C. A. Cote, Role of the ITS2-proximal stem and evidence for indirect recognition of processing sites in pre-rRNA processing in yeast Nucleic Acids Research. ,vol. 29, pp. 2106- 2116 ,(2001) , 10.1093/NAR/29.10.2106