Homotypic clustering of L1 and B1/Alu repeats compartmentalizes the 3D genome.

作者: Miguel Ramalho-Santos , Yujie Sun , Jie Na , Xiaohua Shen , Pilong Li

DOI: 10.1038/S41422-020-00466-6

关键词: BiologyRegulation of gene expressionAlu elementChromatinCell biologyRetrotransposonHeterochromatinDNAEuchromatinGenome

摘要: Organization of the genome into euchromatin and heterochromatin appears to be evolutionarily conserved and relatively stable during lineage differentiation. In an effort to unravel the …

参考文章(130)
Christian B. Anfinsen, Robert R. Redfield, Warren L. Choate, Juanita Page, William R. Carroll, STUDIES ON THE GROSS STRUCTURE, CROSS-LINKAGES, AND TERMINAL SEQUENCES IN RIBONUCLEASE Journal of Biological Chemistry. ,vol. 207, pp. 201- 210 ,(1954) , 10.1016/S0021-9258(18)71260-X
C B Anfinsen, The formation and stabilization of protein structure Biochemical Journal. ,vol. 128, pp. 737- 749 ,(1972) , 10.1042/BJ1280737
Rieka Stunnenberg, Raghavendran Kulasegaran‐Shylini, Claudia Keller, Moritz A Kirschmann, Laurent Gelman, Marc Bühler, None, H3K9 methylation extends across natural boundaries of heterochromatin in the absence of an HP1 protein The EMBO Journal. ,vol. 34, pp. 2789- 2803 ,(2015) , 10.15252/EMBJ.201591320
Prescott Deininger, Alu elements: know the SINEs Genome Biology. ,vol. 12, pp. 236- 236 ,(2011) , 10.1186/GB-2011-12-12-236
Johan H. Gibcus, Job Dekker, The Hierarchy of the 3D Genome Molecular Cell. ,vol. 49, pp. 773- 782 ,(2013) , 10.1016/J.MOLCEL.2013.02.011
Irina Solovei, Moritz Kreysing, Christian Lanctôt, Süleyman Kösem, Leo Peichl, Thomas Cremer, Jochen Guck, Boris Joffe, Nuclear Architecture of Rod Photoreceptor Cells Adapts to Vision in Mammalian Evolution Cell. ,vol. 137, pp. 356- 368 ,(2009) , 10.1016/J.CELL.2009.01.052
Suhas SP Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander, Erez Lieberman Aiden, None, A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping Cell. ,vol. 159, pp. 1665- 1680 ,(2014) , 10.1016/J.CELL.2014.11.021
Jichang Wang, Gangcai Xie, Manvendra Singh, Avazeh T. Ghanbarian, Tamás Raskó, Attila Szvetnik, Huiqiang Cai, Daniel Besser, Alessandro Prigione, Nina V. Fuchs, Gerald G. Schumann, Wei Chen, Matthew C. Lorincz, Zoltán Ivics, Laurence D. Hurst, Zsuzsanna Izsvák, Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells Nature. ,vol. 516, pp. 405- 409 ,(2014) , 10.1038/NATURE13804
Juan Carlos Rivera-Mulia, David M Gilbert, Replication timing and transcriptional control: beyond cause and effect-part III. Current Opinion in Cell Biology. ,vol. 40, pp. 168- 178 ,(2009) , 10.1016/J.CEB.2016.03.022
Aline.V. Probst, Ikuhiro Okamoto, Miguel Casanova, Fatima El Marjou, Patricia Le Baccon, Geneviève Almouzni, A strand-specific burst in transcription of pericentric satellites is required for chromocenter formation and early mouse development. Developmental Cell. ,vol. 19, pp. 625- 638 ,(2010) , 10.1016/J.DEVCEL.2010.09.002