Male Lineages in Brazil: Intercontinental Admixture and Stratification of the European Background

作者: Rafael Resque , Leonor Gusmão , Maria Geppert , Lutz Roewer , Teresinha Palha

DOI: 10.1371/JOURNAL.PONE.0152573

关键词: PopulationPopulation geneticsGenetic structureSingle-nucleotide polymorphismHaplogroupY chromosomePopulation stratificationEvolutionary biologyLineage (evolution)Geography

摘要: The non-recombining nature of the Y chromosome and well-established phylogeny Y-specific Single Nucleotide Polymorphisms (Y-SNPs) make them useful for defining haplogroups with high geographical specificity; therefore, they are more apt than Y-STRs to detect population stratification in admixed populations from diverse continental origins. Different Y-SNP typing strategies have been described address issues history movements within geographic territories interest. In this study, we investigated a set 41 Y-SNPs 1217 unrelated males five Brazilian geopolitical regions, aiming disclose genetic structure male lineages country. A comparison based on pairwise FST distances did not reveal statistically significant differences haplogroup frequency distributions among different regions. observed regions were, however, consistent colonization sample Northern region presented highest Native American ancestry (8.4%), whereas pronounced African contribution could be Northeastern (15.1%). Central-Western Southern samples showed higher European contributions (95.7% 93.6%, respectively). Southeastern (86.1%) (12.0%) contributions. subtyping most frequent lineage Brazil (R1b1a-M269) allowed background first time.

参考文章(53)
Kiyoko Abe-Sandes, Wilson A. Silva, Marco A. Zago, Heterogeneity of the Y Chromosome in Afro-Brazilian Populations Human Biology. ,vol. 76, pp. 77- 86 ,(2004) , 10.1353/HUB.2004.0014
Maria-Catira Bortolini, Francisco M. Salzano, Mark G. Thomas, Steven Stuart, Selja P.K. Nasanen, Claiton H.D. Bau, Mara H. Hutz, Zulay Layrisse, Maria L. Petzl-Erler, Luiza T. Tsuneto, Kim Hill, Ana M. Hurtado, Dinorah Castro-de-Guerra, Maria M. Torres, Helena Groot, Roman Michalski, Pagbajabyn Nymadawa, Gabriel Bedoya, Neil Bradman, Damian Labuda, Andres Ruiz-Linares, Y-Chromosome Evidence for Differing Ancient Demographic Histories in the Americas American Journal of Human Genetics. ,vol. 73, pp. 524- 539 ,(2003) , 10.1086/377588
Susan M. Adams, Elena Bosch, Patricia L. Balaresque, Stéphane J. Ballereau, Andrew C. Lee, Eduardo Arroyo, Ana M. López-Parra, Mercedes Aler, Marina S. Gisbert Grifo, Maria Brion, Angel Carracedo, João Lavinha, Begoña Martínez-Jarreta, Lluis Quintana-Murci, Antònia Picornell, Misericordia Ramon, Karl Skorecki, Doron M. Behar, Francesc Calafell, Mark A. Jobling, The genetic legacy of religious diversity and intolerance: paternal lineages of Christians, Jews, and Muslims in the Iberian Peninsula. American Journal of Human Genetics. ,vol. 83, pp. 725- 736 ,(2008) , 10.1016/J.AJHG.2008.11.007
Bruno Maia Carvalho, Maria Cátira Bortolini, Sidney Emanuel Batista dos Santos, Ândrea Kely Campos Ribeiro-dos-Santos, Mitochondrial DNA mapping of social-biological interactions in Brazilian Amazonian African-descendant populations Genetics and Molecular Biology. ,vol. 31, pp. 12- 22 ,(2008) , 10.1590/S1415-47572008000100002
Pierre A Zalloua, Yali Xue, Jade Khalife, Nadine Makhoul, Labib Debiane, Daniel E Platt, Ajay K Royyuru, Rene J Herrera, David F Soria Hernanz, Jason Blue-Smith, R Spencer Wells, David Comas, Jaume Bertranpetit, Chris Tyler-Smith, None, Y-chromosomal diversity in Lebanon is structured by recent historical events. American Journal of Human Genetics. ,vol. 82, pp. 873- 882 ,(2008) , 10.1016/J.AJHG.2008.01.020
Ornella Semino, Chiara Magri, Giorgia Benuzzi, Alice A. Lin, Nadia Al-Zahery, Vincenza Battaglia, Liliana Maccioni, Costas Triantaphyllidis, Peidong Shen, Peter J. Oefner, Lev A. Zhivotovsky, Roy King, Antonio Torroni, L. Luca Cavalli-Sforza, Peter A. Underhill, A. Silvana Santachiara-Benerecetti, Origin, diffusion, and differentiation of Y-chromosome haplogroups E and J: inferences on the neolithization of Europe and later migratory events in the Mediterranean area. American Journal of Human Genetics. ,vol. 74, pp. 1023- 1034 ,(2004) , 10.1086/386295
Ney P.C. Santos, Elzemar M. Ribeiro-Rodrigues, Ândrea K.C. Ribeiro-dos-Santos, Rui Pereira, Leonor Gusmão, António Amorim, Joáo F. Guerreiro, Marco A. Zago, Cecília Matte, Mara H. Hutz, Sidney E.B. Santos, Assessing individual interethnic admixture and population substructure using a 48-insertion-deletion (INSEL) ancestry-informative marker (AIM) panel. Human Mutation. ,vol. 31, pp. 184- 190 ,(2010) , 10.1002/HUMU.21159
Natalie M Myres, Siiri Rootsi, Alice A Lin, Mari Järve, Roy J King, Ildus Kutuev, Vicente M Cabrera, Elza K Khusnutdinova, Andrey Pshenichnov, Bayazit Yunusbayev, Oleg Balanovsky, Elena Balanovska, Pavao Rudan, Marian Baldovic, Rene J Herrera, Jacques Chiaroni, Julie Di Cristofaro, Richard Villems, Toomas Kivisild, Peter A Underhill, A major Y-chromosome haplogroup R1b Holocene era founder effect in Central and Western Europe. European Journal of Human Genetics. ,vol. 19, pp. 95- 101 ,(2011) , 10.1038/EJHG.2010.146
Sidia M. Callegari-Jacques, Dario Grattapaglia, Francisco M. Salzano, Sabrina P. Salamoni, Shaiane G. Crossetti, M�rcio E. Ferreira, Mara H. Hutz, Historical genetics: Spatiotemporal analysis of the formation of the Brazilian population American Journal of Human Biology. ,vol. 15, pp. 824- 834 ,(2003) , 10.1002/AJHB.10217
George B. J. Busby, Francesca Brisighelli, Paula Sánchez-Diz, Eva Ramos-Luis, Conrado Martinez-Cadenas, Mark G. Thomas, Daniel G. Bradley, Leonor Gusmão, Bruce Winney, Walter Bodmer, Marielle Vennemann, Valentina Coia, Francesca Scarnicci, Sergio Tofanelli, Giuseppe Vona, Rafal Ploski, Carla Vecchiotti, Tatijana Zemunik, Igor Rudan, Sena Karachanak, Draga Toncheva, Paolo Anagnostou, Gianmarco Ferri, Cesare Rapone, Tor Hervig, Torolf Moen, James F. Wilson, Cristian Capelli, The peopling of Europe and the cautionary tale of Y chromosome lineage R-M269. Proceedings of The Royal Society B: Biological Sciences. ,vol. 279, pp. 884- 892 ,(2012) , 10.1098/RSPB.2011.1044