Transcriptional regulation of nitrogen-associated metabolism and growth
作者： Allison Gaudinier , Joel Rodriguez-Medina , Lifang Zhang , Andrew Olson , Christophe Liseron-Monfils
DOI: 10.1038/S41586-018-0656-3
关键词: Biology 、 Fertilizer 、 Nitrogen cycle 、 Cell biology 、 Transcription factor 、 Transcription (biology) 、 Transcriptional regulation 、 Metabolism 、 Gene 、 Regulation of gene expression
摘要: Nitrogen is an essential macronutrient for plant growth and basic metabolic processes. The application of nitrogen-containing fertilizer increases yield, which has been a substantial factor in the green revolution. Ecologically, however, excessive application of fertilizer has disastrous effects such as eutrophication. A better understanding of how plants regulate nitrogen metabolism is critical to increase plant yield and reduce fertilizer overuse. Here we present a transcriptional regulatory network and twenty-one transcription factors that …
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Thomas L. Saaty, Principles of the analytic hierarchy process Expert judgment and expert systems. pp. 27- 73 ,(1987) , 10.1007/978-3-642-86679-1_3
David A. Orlando, Siobhan M. Brady, Jeremy D. Koch, José R. Dinneny, Philip N. Benfey, Manipulating large-scale Arabidopsis microarray expression data: identifying dominant expression patterns and biological process enrichment. Methods of Molecular Biology. ,vol. 553, pp. 57- 77 ,(2009) , 10.1007/978-1-60327-563-7_4
Brad T. Townsley, Michael F. Covington, Yasunori Ichihashi, Kristina Zumstein, Neelima R. Sinha, BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand specific mRNA library construction. Frontiers in Plant Science. ,vol. 6, pp. 366- 366 ,(2015) , 10.3389/FPLS.2015.00366
Hadley Wickham, ggplot2: Elegant Graphics for Data Analysis ,(2009)
Yong-Mei Bi, Yu Zhang, Tara Signorelli, Rong Zhao, Tong Zhu, Steven Rothstein, Genetic analysis of Arabidopsis GATA transcription factor gene family reveals a nitrate-inducible member important for chlorophyll synthesis and glucose sensitivity The Plant Journal. ,vol. 44, pp. 680- 692 ,(2005) , 10.1111/J.1365-313X.2005.02568.X
Peizhu Guan, Rongchen Wang, Philippe Nacry, Ghislain Breton, Steve A. Kay, Jose L. Pruneda-Paz, Ariea Davani, Nigel M. Crawford, Nitrate foraging by Arabidopsis roots is mediated by the transcription factor TCP20 through the systemic signaling pathway Proceedings of the National Academy of Sciences of the United States of America. ,vol. 111, pp. 15267- 15272 ,(2014) , 10.1073/PNAS.1411375111
Chuang Ma, Xiangfeng Wang, Application of the Gini Correlation Coefficient to Infer Regulatory Relationships in Transcriptome Analysis Plant Physiology. ,vol. 160, pp. 192- 203 ,(2012) , 10.1104/PP.112.201962
Wolfgang Huber, Vincent J Carey, Robert Gentleman, Simon Anders, Marc Carlson, Benilton S Carvalho, Hector Corrada Bravo, Sean Davis, Laurent Gatto, Thomas Girke, Raphael Gottardo, Florian Hahne, Kasper D Hansen, Rafael A Irizarry, Michael Lawrence, Michael I Love, James MacDonald, Valerie Obenchain, Andrzej K Oleś, Hervé Pagès, Alejandro Reyes, Paul Shannon, Gordon K Smyth, Dan Tenenbaum, Levi Waldron, Martin Morgan, Orchestrating high-throughput genomic analysis with Bioconductor Nature Methods. ,vol. 12, pp. 115- 121 ,(2015) , 10.1038/NMETH.3252
Benjamin D. Gruber, Ricardo F.H. Giehl, Swetlana Friedel, Nicolaus von Wirén, Plasticity of the Arabidopsis Root System under Nutrient Deficiencies Plant Physiology. ,vol. 163, pp. 161- 179 ,(2013) , 10.1104/PP.113.218453
John S Reece-Hoyes, Alos Diallo, Bryan Lajoie, Amanda Kent, Shaleen Shrestha, Sreenath Kadreppa, Colin Pesyna, Job Dekker, Chad L Myers, Albertha J M Walhout, Enhanced yeast one-hybrid assays for high-throughput gene-centered regulatory network mapping Nature Methods. ,vol. 8, pp. 1059- 1064 ,(2011) , 10.1038/NMETH.1748