Engineered DNA Polymerases

作者: Roberto Laos , Ryan W. Shaw , Steven A. Benner

DOI: 10.1007/978-3-642-39796-7_7

关键词: NucleotideNucleic acidComputational biologySystematic evolution of ligands by exponential enrichmentPolymeraseDNA polymeraseDirected evolutionGeneBiologyPhage display

摘要: This chapter reviews the methods used to generate variants of DNA polymerases that have improved ability, in particular accept unnatural nucleotides, focusing especially on vitro and directed evolution methods. Several natural families independently evolved for millions years their nucleotide substrates with high fidelity ability exclude closely related structures, such as ribonucleoside derivatives. However, can would many applications biotechnology. Directed may be an efficient method produce new capable do so. relies create a library sequence diverse starting gene parent polymerase. These are reviewed here, well examples application variant polymerases. An evolutionary rationalization is offered explain some mutations produced by experiments.

参考文章(56)
Aki Tosaka, Masanori Ogawa, Shonen Yoshida, Motoshi Suzuki, O-helix Mutant T664P ofThermus aquaticusDNA Polymerase I Journal of Biological Chemistry. ,vol. 276, pp. 27562- 27567 ,(2001) , 10.1074/JBC.M010635200
Nicholas J Turner, Directed evolution drives the next generation of biocatalysts Nature Chemical Biology. ,vol. 5, pp. 567- 573 ,(2009) , 10.1038/NCHEMBIO.203
J.-P. Vartanian, M. Henry, S. Wain-Hobson, Hypermutagenic PCR Involving All Four Transitions and a Sizeable Proportion of Transversions Nucleic Acids Research. ,vol. 24, pp. 2627- 2631 ,(1996) , 10.1093/NAR/24.14.2627
Marcel Hollenstein, Christopher J. Hipolito, Curtis H. Lam, David M. Perrin, A DNAzyme with three protein-like functional groups: enhancing catalytic efficiency of M2+-independent RNA cleavage. ChemBioChem. ,vol. 10, pp. 1988- 1992 ,(2009) , 10.1002/CBIC.200900314
Tuck Seng Wong, Tuck Seng Wong, Danilo Roccatano*, Ulrich Schwaneberg, Challenges of the genetic code for exploring sequence space in directed protein evolution Biocatalysis and Biotransformation. ,vol. 25, pp. 229- 241 ,(2007) , 10.1080/10242420701444280
John Maynard Smith, None, Natural selection and the concept of a protein space. Nature. ,vol. 225, pp. 563- 564 ,(1970) , 10.1038/225563A0
Dan K. Braithwaite, Junetsu Ito, Compilation, alignment, and phylogenetic relationships of DNA polymerases Nucleic Acids Research. ,vol. 21, pp. 787- 802 ,(1993) , 10.1093/NAR/21.4.787
G. Xia, L. Chen, T. Sera, M. Fa, P. G. Schultz, F. E. Romesberg, Directed evolution of novel polymerase activities: mutation of a DNA polymerase into an efficient RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 99, pp. 6597- 6602 ,(2002) , 10.1073/PNAS.102577799
Hans Leemhuis, Ronan M. Kelly, Lubbert Dijkhuizen, Directed evolution of enzymes: Library screening strategies. Iubmb Life. ,vol. 61, pp. 222- 228 ,(2009) , 10.1002/IUB.165
Nicola Ramsay, Ann-Sofie Jemth, Anthony Brown, Neal Crampton, Paul Dear, Philipp Holliger, CyDNA: synthesis and replication of highly Cy-dye substituted DNA by an evolved polymerase. Journal of the American Chemical Society. ,vol. 132, pp. 5096- 5104 ,(2010) , 10.1021/JA909180C