GeneSense: a new approach for human gene annotation integrated with protein-protein interaction networks.

作者: Zhongzhong Chen , Tianhong Zhang , Jun Lin , Zidan Yan , Yongren Wang

DOI: 10.1038/SREP04474

关键词: Gene AnnotationComputational biologyMolecular Sequence AnnotationWorld Wide WebThe InternetProtein protein interaction networkText miningComputer science

摘要: GeneSense: a new approach for human gene annotation integrated with protein-protein interaction networks

参考文章(47)
Manuel Corpas, Eugene Bragin, Stephen Clayton, Paul Bevan, Helen V. Firth, Interpretation of genomic copy number variants using DECIPHER. Current protocols in human genetics. ,vol. 72, ,(2012) , 10.1002/0471142905.HG0814S72
M. S. Han, D. Y. Jung, C. Morel, S. A. Lakhani, J. K. Kim, R. A. Flavell, R. J. Davis, JNK expression by macrophages promotes obesity-induced insulin resistance and inflammation. Science. ,vol. 339, pp. 218- 222 ,(2013) , 10.1126/SCIENCE.1227568
Kristian A. Gray, Louise C. Daugherty, Susan M. Gordon, Ruth L. Seal, Mathew W. Wright, Elspeth A. Bruford, Genenames.org: the HGNC resources in 2013 Nucleic Acids Research. ,vol. 41, pp. 545- 552 ,(2012) , 10.1093/NAR/GKS1066
L. G. Wilming, J. G. R. Gilbert, K. Howe, S. Trevanion, T. Hubbard, J. L. Harrow, The vertebrate genome annotation (Vega) database Nucleic Acids Research. ,vol. 36, pp. 459- 465 ,(2004) , 10.1093/NAR/GKM987
S. A. Forbes, N. Bindal, S. Bamford, C. Cole, C. Y. Kok, D. Beare, M. Jia, R. Shepherd, K. Leung, A. Menzies, J. W. Teague, P. J. Campbell, M. R. Stratton, P. A. Futreal, COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer. Nucleic Acids Research. ,vol. 39, pp. 945- 950 ,(2011) , 10.1093/NAR/GKQ929
Jean Frézal, Genatlas database, genes and development defects Comptes Rendus De L Academie Des Sciences Serie Iii-sciences De La Vie-life Sciences. ,vol. 321, pp. 805- 817 ,(1998) , 10.1016/S0764-4469(99)80021-3
Andrew Chatr-aryamontri, Bobby-Joe Breitkreutz, Sven Heinicke, Lorrie Boucher, Andrew Winter, Chris Stark, Julie Nixon, Lindsay Ramage, Nadine Kolas, Lara O’Donnell, Teresa Reguly, Ashton Breitkreutz, Adnane Sellam, Daici Chen, Christie Chang, Jennifer Rust, Michael Livstone, Rose Oughtred, Kara Dolinski, Mike Tyers, The BioGRID interaction database: 2013 update Nucleic Acids Research. ,vol. 41, pp. 816- 823 ,(2012) , 10.1093/NAR/GKS1158
Fidel Ramírez, Andreas Schlicker, Yassen Assenov, Thomas Lengauer, Mario Albrecht, Computational analysis of human protein interaction networks. Proteomics. ,vol. 7, pp. 2541- 2552 ,(2007) , 10.1002/PMIC.200600924
N. D. Rawlings, A. J. Barrett, A. Bateman, MEROPS: the database of proteolytic enzymes, their substrates and inhibitors Nucleic Acids Research. ,vol. 40, pp. 343- 350 ,(2012) , 10.1093/NAR/GKR987
Jianmin Wu, Tea Vallenius, Kristian Ovaska, Jukka Westermarck, Tomi P Mäkelä, Sampsa Hautaniemi, Integrated network analysis platform for protein-protein interactions Nature Methods. ,vol. 6, pp. 75- 77 ,(2009) , 10.1038/NMETH.1282