Expanded inverted repeat region with large scale inversion in the first complete plastid genome sequence of Plantago ovata.

作者: Sajjad Asaf , Abdul Latif Khan , Lubna , Adil Khan , Arif Khan

DOI: 10.1038/S41598-020-60803-Y

关键词: Plantago ovataPlantaginaceaeEvolutionary biologyGenomeGenomicsBiologyChloroplast DNAInverted repeatPhylogenetic treeWhole genome sequencing

摘要: Plantago ovata (Plantaginaceae) is an economically and medicinally important species, however, least is known about its genomics and evolution. Here, we report the first complete …

参考文章(102)
MANOJ K. DHAR, BERND FRIEBE, SANJANA KAUL, BIKRAM S. GILL, Characterization and physical mapping of ribosomal RNA gene families in Plantago. Annals of Botany. ,vol. 97, pp. 541- 548 ,(2006) , 10.1093/AOB/MCL017
K. Katoh, D. M. Standley, MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability Molecular Biology and Evolution. ,vol. 30, pp. 772- 780 ,(2013) , 10.1093/MOLBEV/MST010
Alan M Magee, Sue Aspinall, Danny W Rice, Brian P Cusack, Marie Sémon, Antoinette S Perry, Saša Stefanović, Dan Milbourne, Susanne Barth, Jeffrey D Palmer, John C Gray, Tony A Kavanagh, Kenneth H Wolfe, Localized Hypermutation and Associated Gene Losses in Legume Chloroplast Genomes Genome Research. ,vol. 20, pp. 1700- 1710 ,(2010) , 10.1101/GR.111955.110
Eman K Al-Dous, Binu George, Maryam E Al-Mahmoud, Moneera Y Al-Jaber, Hao Wang, Yasmeen M Salameh, Eman K Al-Azwani, Srinivasa Chaluvadi, Ana C Pontaroli, Jeremy DeBarry, Vincent Arondel, John Ohlrogge, Imad J Saie, Khaled M Suliman-Elmeer, Jeffrey L Bennetzen, Robert R Kruegger, Joel A Malek, De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera) Nature Biotechnology. ,vol. 29, pp. 521- 527 ,(2011) , 10.1038/NBT.1860
Ruth E. Timme, Jennifer V. Kuehl, Jeffrey L. Boore, Robert K. Jansen, A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats American Journal of Botany. ,vol. 94, pp. 302- 312 ,(2007) , 10.3732/AJB.94.3.302
Joel R McNeal, Jennifer V Kuehl, Jeffrey L Boore, Claude W de Pamphilis, Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta BMC Plant Biology. ,vol. 7, pp. 57- 57 ,(2007) , 10.1186/1471-2229-7-57
Andan Zhu, Wenhu Guo, Sakshi Gupta, Weishu Fan, Jeffrey P. Mower, Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates New Phytologist. ,vol. 209, pp. 1747- 1756 ,(2016) , 10.1111/NPH.13743
J P Mascarenhas, Gene Activity During Pollen Development Annual Review of Plant Physiology and Plant Molecular Biology. ,vol. 41, pp. 317- 338 ,(1990) , 10.1146/ANNUREV.PP.41.060190.001533
Balbir Kour, Shivanjali Kotwal, Manoj K. Dhar, Sanjana Kaul, Genetic diversity analysis in Plantago ovata and some of its wild allies using RAPD markers Russian Agricultural Sciences. ,vol. 42, pp. 37- 41 ,(2016) , 10.3103/S1068367416010055