Computational design of catalytic dyads and oxyanion holes for ester hydrolysis.
作者： Florian Richter , Rebecca Blomberg , Sagar D. Khare , Gert Kiss , Alexandre P. Kuzin
DOI: 10.1021/JA3037367
关键词: Nucleophile 、 Polymer chemistry 、 Organic chemistry 、 Biocatalysis 、 Hydrogen bond 、 Chemistry 、 Hydrolase 、 Catalysis 、 Amide 、 Hydrolysis 、 Oxyanion
摘要: Nucleophilic catalysis is a general strategy for accelerating ester and amide hydrolysis. In natural active sites, nucleophilic elements such as catalytic dyads triads are usually paired with o...
acs.org
rcsb.org
researchgate.net 参考文章(54)
Yukito Murakami, Functionalized cyclophanes as catalysts and enzyme models Springer Berlin Heidelberg. pp. 107- 155 ,(1983) , 10.1007/3-540-12478-0_3
Yves A. DeClerck, Suzan Imren, Anthony M. P. Montgomery, Barbara M. Mueller, Ralph A. Reisfeld, Walter E. Laug, Proteases and Protease Inhibitors in Tumor Progression Advances in Experimental Medicine and Biology. ,vol. 425, pp. 89- 97 ,(1997) , 10.1007/978-1-4615-5391-5_9
Saul Patai., The chemistry of the thiol group. Wiley,. ,(1974)
G LOWE, A WILLIAMS, PAPAIN-CATALYSED HYDROLYSIS OF SOME HIPPURIC ESTERS. A NEW MECHANISM FOR PAPAIN-CATALYSED HYDROLYSIS. Biochemical Journal. ,vol. 96, pp. 199- 204 ,(1965) , 10.1042/BJ0960199
Xiyun Zhang, Jason DeChancie, Hakan Gunaydin, Arnab B. Chowdry, Fernando R. Clemente, Smith, T. M. Handel, K. N. Houk, Quantum mechanical design of enzyme active sites. Journal of Organic Chemistry. ,vol. 73, pp. 889- 899 ,(2008) , 10.1021/JO701974N
D. N. Bolon, S. L. Mayo, Enzyme-like proteins by computational design Proceedings of the National Academy of Sciences of the United States of America. ,vol. 98, pp. 14274- 14279 ,(2001) , 10.1073/PNAS.251555398
Gavin MacBeath, Donald Hilvert, Hydrolytic antibodies: variations on a theme Chemistry & Biology. ,vol. 3, pp. 433- 445 ,(1996) , 10.1016/S1074-5521(96)90091-5
S PANKE, M HELD, M WUBBOLTS, Trends and innovations in industrial biocatalysis for the production of fine chemicals. Current Opinion in Biotechnology. ,vol. 15, pp. 272- 279 ,(2004) , 10.1016/J.COPBIO.2004.06.011
K. Janda, D Schloeder, S. Benkovic, R. Lerner, Induction of an antibody that catalyzes the hydrolysis of an amide bond. Science. ,vol. 241, pp. 1188- 1191 ,(1988) , 10.1126/SCIENCE.3413482
Daniela Röthlisberger, Olga Khersonsky, Andrew M. Wollacott, Lin Jiang, Jason DeChancie, Jamie Betker, Jasmine L. Gallaher, Eric A. Althoff, Alexandre Zanghellini, Orly Dym, Shira Albeck, Kendall N. Houk, Dan S. Tawfik, David Baker, Kemp elimination catalysts by computational enzyme design Nature. ,vol. 453, pp. 190- 195 ,(2008) , 10.1038/NATURE06879