AU-rich RNA-binding induces changes in the quaternary structure of AUH.

作者: Kazuki Kurimoto , Kanako Kuwasako , Alan M. Sandercock , Satoru Unzai , Carol V. Robinson

DOI: 10.1002/PROT.22246

关键词: EnzymeRNA-binding proteinRNAStereochemistryDehydrataseTrimerChemistryLyaseDimerProtein quaternary structure

摘要: The human AU RNA binding protein/enoyl-Coenzyme A hydratase (AUH) is a 3-hydroxy-3-methylglutaconyl-CoA dehydratase in the leucine degradation pathway. It also possesses an RNA-binding activity to AUUU repeats, which involves no known conserved domains and seemingly unrelated enzymatic activity. In this study, we performed mass spectrometric analyses elucidate oligomeric states of AUH presence absence RNA. With short (AUUU) or without RNA, mainly exists as trimer solution. On other hand, dimerizes upon one molecule long containing 24 repeats motif, (AUUU)24A. was crystallized with Although disordered crystalline lattice, structure determined asymmetric dimer trimers kink alignment axes, resulting formation two clefts significantly different sizes. Proteins 2009. © 2008 Wiley-Liss, Inc.

参考文章(53)
T Preiss, A G Hall, R N Lightowlers, Identification of bovine glutamate dehydrogenase as an RNA-binding protein. Journal of Biological Chemistry. ,vol. 268, pp. 24523- 24526 ,(1993) , 10.1016/S0021-9258(19)74494-9
Zbyszek Otwinowski, Wladek Minor, Processing of X-ray diffraction data collected in oscillation mode Methods in Enzymology. ,vol. 276, pp. 307- 326 ,(1997) , 10.1016/S0076-6879(97)76066-X
Alfred A. Antson, Eleanor J. Dodson, Guy Dodson, Richard B. Greaves, Xiao-ping Chen, Paul Gollnick, Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA Nature. ,vol. 401, pp. 235- 242 ,(1999) , 10.1038/45730
Rika Nanbu, Takeo Kubo, Takashi Hashimoto, Shunji Natori, Purification of an AU-Rich RNA Binding Protein from Sarcophaga peregrina (Flesh Fly) and Its Identification as a Thiolase1 The Journal of Biochemistry. ,vol. 114, pp. 432- 437 ,(1993) , 10.1093/OXFORDJOURNALS.JBCHEM.A124193
NICOLA SCHAVONE, PAOLO ROSINI, ALESSANDRO QUATTRONE, MARTINO DONNINI, ANDREA LAPUCCI, LORENZO CITTI, ANNA BEVILACQUA, ANGELO NICOLIN, SERGIO CAPACCIOLI, A conserved AU-rich element in the 3′ untranslated region of bcl-2 mRNA is endowed with a destabilizing function that is involved in bcl-2 down-regulation during apoptosis The FASEB Journal. ,vol. 14, pp. 174- 184 ,(2000) , 10.1096/FASEBJ.14.1.174
Matthias Mack, Ute Schniegler-Mattox, Verena Peters, Georg F. Hoffmann, Michael Liesert, Wolfgang Buckel, Johannes Zschocke, Biochemical characterization of human 3-methylglutaconyl-CoA hydratase and its role in leucine metabolism. FEBS Journal. ,vol. 273, pp. 2012- 2022 ,(2006) , 10.1111/J.1742-4658.2006.05218.X
G Brewer, J Ross, Poly(A) shortening and degradation of the 3' A+U-rich sequences of human c-myc mRNA in a cell-free system Molecular and Cellular Biology. ,vol. 8, pp. 1697- 1708 ,(1988) , 10.1128/MCB.8.4.1697
C. K. Engel, M. Mathieu, J. P. Zeelen, J. K. Hiltunen, R. K. Wierenga, Crystal structure of enoyl-coenzyme A (CoA) hydratase at 2.5 angstroms resolution: a spiral fold defines the CoA-binding pocket. The EMBO Journal. ,vol. 15, pp. 5135- 5145 ,(1996) , 10.1002/J.1460-2075.1996.TB00897.X
Edward Chu, Chris H. Takimoto, Donna Voeller, Jean L. Grem, Carmen J. Allegra, Specific Binding of Human Dihydrofolate Reductase Protein to Dihydrofolate Reductase Messenger RNA in Vitro Biochemistry. ,vol. 32, pp. 4756- 4760 ,(1993) , 10.1021/BI00069A009