First siRNA library screening in hard-to-transfect HUVEC cells.

作者: Nicole Ue Spottke , Sheila M Offizier , Ludger M Altrogge , Sonja Spicker , Devin Leake

DOI:

关键词: Cell cycleViability assayBiomedical engineeringCell biologyCell typeRNA interferenceMedicineNucleofectionPrimary cellCell growthTransfection

摘要: Meaningful RNAi-based data for target gene identification are strongly dependent on the use of a biologically relevant cell type and efficient delivery highly functional siRNA reagents into selected type. Here we report Amaxa® Nucleofector® 96-well Shuttle® System screening in primary cells. Lonza’s Clonetics® HUVEC-Human Umbilical Vein Endothelial Cells were transfected with Thermo Scientific Dharmacon siGENOME® Libraries targeting protein kinases cycle related genes screened important viability. Of 37 hits, down-regulation 33 led to reduced proliferation or increased death, while two allowed better The validated four out 16 strongest hits (COPB2, PYCS, CDK4 MYC) influenced varying degrees, reflecting differing importance survival HUVEC Our results demonstrate that allows libraries types previously considered be difficult transfect. Thus, validation targets can now conducted cells, as selection is not limited those accessible by lipid-mediated transfection.

参考文章(46)
Susan Calvin, Jeff Emch Calvin, Simone Pitz, Linda Jacobsen, Jay Wang, FuGENE®HD Transfection Reagent: Choice of a Transfection Reagent with Minimal Off-Target Effect as Analyzed by Microarray Transcriptional Profiling Nature Methods | Application Notes. ,(2006) , 10.1038/AN2079
J-Y Kato, H Matsushime, SW Hiebert, ME Ewen, CJ Sherr, Direct binding of cyclin D to the retinoblastoma gene product (pRb) and pRb phosphorylation by the cyclin D-dependent kinase CDK4. Genes & Development. ,vol. 7, pp. 331- 342 ,(1993) , 10.1101/GAD.7.3.331
Sara K. Oster, Cynthia S.W. Ho, Erinn L. Soucie, Linda Z. Penn, The myc Oncogene: omplex Advances in Cancer Research. ,vol. 84, pp. 81- 154 ,(2002) , 10.1016/S0065-230X(02)84004-0
Y. Yada, K. Higuchi, G. Imokawa, Effects of endothelins on signal transduction and proliferation in human melanocytes. Journal of Biological Chemistry. ,vol. 266, pp. 18352- 18357 ,(1991) , 10.1016/S0021-9258(18)55277-7
Sophie Béraud-Dufour, William Balch, A journey through the exocytic pathway. Journal of Cell Science. ,vol. 115, pp. 1779- 1780 ,(2002) , 10.1242/JCS.115.9.1779
Juan S Bonifacino, Benjamin S Glick, The Mechanisms of Vesicle Budding and Fusion Cell. ,vol. 116, pp. 153- 166 ,(2004) , 10.1016/S0092-8674(03)01079-1
Michael Csukai, Che-Hong Chen, Maria Antonietta De Matteis, Daria Mochly-Rosen, The Coatomer Protein β′-COP, a Selective Binding Protein (RACK) for Protein Kinase Cε Journal of Biological Chemistry. ,vol. 272, pp. 29200- 29206 ,(1997) , 10.1074/JBC.272.46.29200
A Follenzi, S Bakovic, P Gual, M C Stella, P Longati, P M Comoglio, Cross-talk between the proto-oncogenes Met and Ron Oncogene. ,vol. 19, pp. 3041- 3049 ,(2000) , 10.1038/SJ.ONC.1203620
Jennifer S. Carew, Steffan T. Nawrocki, Yelena V. Krupnik, Kenneth Dunner, David J. McConkey, Michael J. Keating, Peng Huang, Targeting endoplasmic reticulum protein transport: a novel strategy to kill malignant B cells and overcome fludarabine resistance in CLL. Blood. ,vol. 107, pp. 222- 231 ,(2006) , 10.1182/BLOOD-2005-05-1923
Ji-Hu Zhang, Thomas D. Y. Chung, Kevin R. Oldenburg, A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays. Journal of Biomolecular Screening. ,vol. 4, pp. 67- 73 ,(1999) , 10.1177/108705719900400206