Fluorescent genetic barcoding in mammalian cells for enhanced multiplexing capabilities in flow cytometry

作者: Cameron A. Smurthwaite , Brett J. Hilton , Ryan O'Hanlon , Zachary D. Stolp , Bryan M. Hancock

DOI: 10.1002/CYTO.A.22406

关键词: BiologyFluorescenceComputational biologyCell cultureGreen fluorescent proteinMolecular biologyAequorea victoriaGeneCellStainingFlow cytometry

摘要: The discovery of the green fluorescent protein from Aequorea victoria has revolutionized field cell and molecular biology. Since its a growing panel proteins, fluorophores fluorescent-coupled staining methodologies, have expanded analytical capabilities flow cytometry. Here, we exploit power genetic engineering to barcode individual cells with genes encoding proteins. For engineering, utilize retroviral technology, which allows for expression ectopic information in stable manner mammalian cells. We genetically barcoded both adherent nonadherent different Multiplexing was increased by combining number distinct fluorescence intensity each channel. Moreover, proven be at least 6-month period, is critical applications such as biological screens. shown applicability multiplexing cell-based assays that rely themselves on barcoding, or classical protocols. Fluorescent barcoding gives an inherited characteristic distinguishes it counterpart. Once lines are developed, no further manipulation required, decreasing time, nonspecific background associated protocols, cost. increasing discovered and/or engineered proteins unique absorbance/emission spectra, combined detection devices lasers, increases versatility, making powerful tool cytometry-based analysis.

参考文章(64)
Ana Limón, Javier Briones, Teresa Puig, Mercé Carmona, Oscar Fornas, José Antonio Cancelas, Margarita Nadal, Joan Garcı́a, Félix Rueda, Jordi Barquinero, High-titer retroviral vectors containing the enhanced green fluorescent protein gene for efficient expression in hematopoietic cells. Blood. ,vol. 90, pp. 3316- 3321 ,(1997) , 10.1182/BLOOD.V90.9.3316
Bruce S. Edwards, Susan M. Young, Irena Ivnitsky-Steele, Richard D. Ye, Eric R. Prossnitz, Larry A. Sklar, High-Content Screening: Flow Cytometry Analysis Methods in Molecular Biology. ,vol. 486, pp. 151- 165 ,(2009) , 10.1007/978-1-60327-545-3_11
Tione Buranda, Yang Wu, Larry A. Sklar, Quantum dots for quantitative flow cytometry Methods of Molecular Biology. ,vol. 699, pp. 67- 84 ,(2011) , 10.1007/978-1-61737-950-5_4
Kenneth R. Schulz, Erika A. Danna, Peter O. Krutzik, Garry P. Nolan, Single-cell phospho-protein analysis by flow cytometry. Current protocols in immunology. ,vol. 96, ,(2007) , 10.1002/0471142735.IM0817S96
Omar D. Perez, Garry P. Nolan, Simultaneous measurement of multiple active kinase states using polychromatic flow cytometry Nature Biotechnology. ,vol. 20, pp. 155- 162 ,(2002) , 10.1038/NBT0202-155
Bruce S. Edwards, Irena Ivnitski‐Steele, Susan M. Young, Virginia M. Salas, Larry A. Sklar, High‐Throughput Cytotoxicity Screening by Propidium Iodide Staining Current protocols in immunology. ,vol. 41, ,(2007) , 10.1002/0471142956.CY0924S41
Bruce S. Edwards, Larry A. Sklar, Plug Flow Cytometry Current Protocols in Cytometry. ,vol. 17, ,(2001) , 10.1002/0471142956.CY0117S17
Peter O. Krutzik, Matthew R. Clutter, Angelica Trejo, Garry P. Nolan, Fluorescent Cell Barcoding for Multiplex Flow Cytometry Current Protocols in Cytometry. ,vol. 55, ,(2011) , 10.1002/0471142956.CY0631S55
Rong Lu, Norma F Neff, Stephen R Quake, Irving L Weissman, Tracking single hematopoietic stem cells in vivo using high-throughput sequencing in conjunction with viral genetic barcoding Nature Biotechnology. ,vol. 29, pp. 928- 933 ,(2011) , 10.1038/NBT.1977
DINA MARKOWITZ, CHARLES HESDORFFER, MAUREEN WARD, STEPHEN GOFF, ARTHUR BANK, Retroviral Gene Transfer Using Safe and Efficient Packaging Cell Lines Annals of the New York Academy of Sciences. ,vol. 612, pp. 407- 414 ,(1990) , 10.1111/J.1749-6632.1990.TB24328.X