Tablet—next generation sequence assembly visualization
作者： I. Milne , M. Bayer , L. Cardle , P. Shaw , G. Stephen
DOI: 10.1093/BIOINFORMATICS/BTP666
关键词: Operating system 、 OS X 、 Software 、 Microsoft Windows 、 Database 、 Computer science 、 Next generation sequence 、 Visualization 、 Installation
摘要: … Work is in progress to support paired-end sequence data, and to enhance Tablet's visualization of annotation data. We also plan to further reduce Tablet's memory requirements by …
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H. Li, B. Handsaker, A. Wysoker, T. Fennell, J. Ruan, N. Homer, G. Marth, G. Abecasis, R. Durbin, , The Sequence Alignment/Map format and SAMtools Bioinformatics. ,vol. 25, pp. 2078- 2079 ,(2009) , 10.1093/BIOINFORMATICS/BTP352
Michael C Schatz, Adam M Phillippy, Ben Shneiderman, Steven L Salzberg, Hawkeye: an interactive visual analytics tool for genome assemblies Genome Biology. ,vol. 8, pp. 1- 12 ,(2007) , 10.1186/GB-2007-8-3-R34
W. Huang, G. Marth, EagleView: A genome assembly viewer for next-generation sequencing technologies Genome Research. ,vol. 18, pp. 1538- 1543 ,(2008) , 10.1101/GR.076067.108
Marcel Margulies, Michael Egholm, William E Altman, Said Attiya, Joel S Bader, Lisa A Bemben, Jan Berka, Michael S Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B Dewell, Lei Du, Joseph M Fierro, Xavier V Gomes, Brian C Godwin, Wen He, Scott Helgesen, Chun He Ho, Gerard P Irzyk, Szilveszter C Jando, Maria LI Alenquer, Thomas P Jarvie, Kshama B Jirage, Jong-Bum Kim, James R Knight, Janna R Lanza, John H Leamon, Steven M Lefkowitz, Ming Lei, Jing Li, Kenton L Lohman, Hong Lu, Vinod B Makhijani, Keith E McDade, Michael P McKenna, Eugene W Myers, Elizabeth Nickerson, John R Nobile, Ramona Plant, Bernard P Puc, Michael T Ronan, George T Roth, Gary J Sarkis, Jan Fredrik Simons, John W Simpson, Maithreyan Srinivasan, Karrie R Tartaro, Alexander Tomasz, Kari A Vogt, Greg A Volkmer, Shally H Wang, Yong Wang, Michael P Weiner, Pengguang Yu, Richard F Begley, Jonathan M Rothberg, None, Genome sequencing in microfabricated high-density picolitre reactors Nature. ,vol. 437, pp. 376- 380 ,(2005) , 10.1038/NATURE03959
H. Bao, H. Guo, J. Wang, R. Zhou, X. Lu, S. Shi, MapView: visualization of short reads alignment on a desktop computer Bioinformatics. ,vol. 25, pp. 1554- 1555 ,(2009) , 10.1093/BIOINFORMATICS/BTP255
David Gordon, Chris Abajian, Phil Green, Consed: A Graphical Tool for Sequence Finishing Genome Research. ,vol. 8, pp. 195- 202 ,(1998) , 10.1101/GR.8.3.195