Draft Genome Sequences of 42 Helicobacter pylori Isolates from Rural Regions of South India.

作者: Vignesh Shetty , Binit Lamichhane , Eng-Guan Chua , Mamatha Ballal , Chin-Yen Tay

DOI: 10.1128/GENOMEA.01486-17

关键词: GeneticsRural populationBiologyGenomePathogenCancerHelicobacter pylori

摘要: ABSTRACT Helicobacter pylori is a successful human gastric pathogen that associated with the development of cancer. The draft genome sequences 42 H. pylori clinical strains isolated from South Indian rural populations will provide further insights into evolution and genetic makeup strains.

参考文章(7)
CN, Jr Stewart, Laura E Via, A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications. BioTechniques. ,vol. 14, pp. 748- 750 ,(1993)
David Y. Graham, Selvi Thirumurthi, Helicobacter pylori infection in India from a western perspective Indian Journal of Medical Research. ,vol. 136, pp. 549- 562 ,(2012)
Valeria Montano, Xavier Didelot, Matthieu Foll, Bodo Linz, Richard Reinhardt, Sebastian Suerbaum, Yoshan Moodley, Jeffrey D. Jensen, Worldwide Population Structure, Long-Term Demography, and Local Adaptation of Helicobacter pylori Genetics. ,vol. 200, pp. 947- 963 ,(2015) , 10.1534/GENETICS.115.176404
Narender Kumar Narender Kumar, Vanitha Mariappan Vanitha Mariappan, Ramani Baddam Ramani Baddam, AK Lankapalli, Sabiha Shaik Sabiha Shaik, Goh KheanLee Goh KheanLee, Loke MunFai Loke MunFai, T Perkins, Mohammed Benghezal Mohammed Benghezal, SE Hasnain, Jamuna Vadivelu Jamuna Vadivelu, BJ Marshall, Niyaz Ahmed Niyaz Ahmed, Comparative genomic analysis of Helicobacter pylori from Malaysia identifies three distinct lineages suggestive of differential evolution. Nucleic Acids Research. ,vol. 43, pp. 324- 335 ,(2015) , 10.1093/NAR/GKU1271
Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son Pham, Andrey D. Prjibelski, Alexey V. Pyshkin, Alexander V. Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner, SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing Journal of Computational Biology. ,vol. 19, pp. 455- 477 ,(2012) , 10.1089/CMB.2012.0021
S J Bhatia, P Abraham, Position paper on Helicobacter pylori in India. Indian Society of Gastroenterology. Indian Journal of Gastroenterology. ,(1997)
Narender Kumar, M. John Albert, Hanan Al Abkal, Iqbal Siddique, Niyaz Ahmed, What constitutes an Arabian Helicobacter pylori? Lessons from comparative genomics. Helicobacter. ,vol. 22, ,(2017) , 10.1111/HEL.12323