Chapter 10 Using Phosphopantetheinyl Transferases for Enzyme Posttranslational Activation, Site Specific Protein Labeling and Identification of Natural Product Biosynthetic Gene Clusters from Bacterial Genomes

作者: Murat Sunbul , Keya Zhang , Jun Yin

DOI: 10.1016/S0076-6879(09)04810-1

关键词: Fatty Acid SynthasesPolyketideBacillus subtilisCoenzyme ABiochemistryBacterial genome sizeFusion proteinNonribosomal peptidePeptideBiology

摘要: Abstract Phosphopantetheinyl transferases (PPTases) covalently attach the phosphopantetheinyl group derived from coenzyme A (CoA) to acyl carrier proteins or peptidyl as part of enzymatic assembly lines fatty acid synthases (FAS), polyketide (PKS), and nonribosomal peptide synthetases (NRPS). PPTases have demonstrated broad substrate specificities for cross‐species modification embedded in PKS NRPS modules. PPTase Sfp Bacillus subtilis AcpS Escherichia coli also transfer small molecules diverse structures their CoA conjugates proteins. Short tags thus been developed efficient substrates site‐specific labeling peptide‐tagged fusion with biotin organic fluorophores. This chapter discusses use vivo vitro enzymes protein labeling. We describe a phage selection method based on PPTase‐catalyzed identification genes bacterial genomes.

参考文章(69)
Fabienne Fichtlscherer, Christian Wellein, Maria Mittag, Eckhart Schweizer, A novel function of yeast fatty acid synthase European Journal of Biochemistry. ,vol. 267, pp. 2666- 2671 ,(2000) , 10.1046/J.1432-1327.2000.01282.X
Mary L Polacco, John E Cronan Jr, None, A mutant of Escherichia coli conditionally defective in the synthesis of holo-[acyl carrier protein]. Journal of Biological Chemistry. ,vol. 256, pp. 5750- 5754 ,(1981) , 10.1016/S0021-9258(19)69270-7
Colin R. Harwood, Simon M. Cutting, Molecular biological methods for Bacillus Wiley. ,(1990)
Songsak Wattanachaisaereekul, Anna Eliasson Lantz, Michael Lynge Nielsen, Ólafur S. Andrésson, Jens Nielsen, Optimization of heterologous production of the polyketide 6‐MSA in Saccharomyces cerevisiae Biotechnology and Bioengineering. ,vol. 97, pp. 893- 900 ,(2007) , 10.1002/BIT.21286
Michael A. Fischbach, Christopher T. Walsh, Assembly-line enzymology for polyketide and nonribosomal Peptide antibiotics: logic, machinery, and mechanisms. Chemical Reviews. ,vol. 106, pp. 3468- 3496 ,(2006) , 10.1021/CR0503097
Jun Yin, Alison J Lin, David E Golan, Christopher T Walsh, Site-specific protein labeling by Sfp phosphopantetheinyl transferase Nature Protocols. ,vol. 1, pp. 280- 285 ,(2006) , 10.1038/NPROT.2006.43
Mohammad Reza Mofid, Robert Finking, Lars Oliver Essen, Mohamed A. Marahiel, Structure-based mutational analysis of the 4'-phosphopantetheinyl transferases Sfp from Bacillus subtilis: carrier protein recognition and reaction mechanism. Biochemistry. ,vol. 43, pp. 4128- 4136 ,(2004) , 10.1021/BI036013H
Nathalie George, Horst Pick, Horst Vogel, Nils Johnsson, Kai Johnsson, Specific Labeling of Cell Surface Proteins with Chemically Diverse Compounds Journal of the American Chemical Society. ,vol. 126, pp. 8896- 8897 ,(2004) , 10.1021/JA048396S