Biodiversity research in the “big data” era: GigaScience and Pensoft work together to publish the most data-rich species description

作者: Scott C Edmunds , Chris I Hunter , Vincent Smith , Pavel Stoev , Lyubomir Penev

DOI: 10.1186/2047-217X-2-14

关键词: Big dataDNA barcodingBiodiversityData sciencePublicationImaging dataSpecies descriptionBiologyData release

摘要: With the publication of first eukaryotic species description, combining transcriptomic, DNA barcoding, and micro-CT imaging data, GigaScience Pensoft demonstrate how classical taxonomic description a new can be enhanced by applying generation molecular methods, novel computing technologies. This 'holistic’ approach in cave-dwelling centipede is published Biodiversity Data Journal (BDJ), with coordinated data release GigaDB database.

参考文章(9)
Oliver Niehuis, Gerrit Hartig, Sonja Grath, Hans Pohl, Jörg Lehmann, Hakim Tafer, Alexander Donath, Veiko Krauss, Carina Eisenhardt, Jana Hertel, Malte Petersen, Christoph Mayer, Karen Meusemann, Ralph S. Peters, Peter F. Stadler, Rolf G. Beutel, Erich Bornberg-Bauer, Duane D. McKenna, Bernhard Misof, Genomic and Morphological Evidence Converge to Resolve the Enigma of Strepsiptera Current Biology. ,vol. 22, pp. 1309- 1313 ,(2012) , 10.1016/J.CUB.2012.05.018
Sarah Faulwetter, Aikaterini Vasileiadou, Michail Kouratoras, Thanos Dailianis, Christos Arvanitidis, Micro-computed tomography: Introducing new dimensions to taxonomy ZooKeys. ,vol. 263, pp. 1- 45 ,(2013) , 10.3897/ZOOKEYS.263.4261
Hans Pohl, Oliver Niehuis, Kai Gloyna, Bernhard Misof, Rolf Beutel, A new species of Mengenilla (Insecta, Strepsiptera) from Tunisia ZooKeys. ,vol. 198, pp. 79- 101 ,(2012) , 10.3897/ZOOKEYS.198.2334
Pavel Stoev, Ana Komerički, Nesrine Akkari, Shanlin Liu, Xin Zhou, Alexander Weigand, Jeroen Hostens, Christopher Hunter, Scott Edmunds, David Porco, Marzio Zapparoli, Teodor Georgiev, Daniel Mietchen, David Roberts, Sarah Faulwetter, Vincent Smith, Lyubomir Penev, Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data. Biodiversity Data Journal. ,vol. 1, pp. 1- 37 ,(2013) , 10.3897/BDJ.1.E1013
Vincent Smith, Teodor Georgiev, Pavel Stoev, Jordan Biserkov, Jeremy Miller, Laurence Livermore, Edward Baker, Daniel Mietchen, Thomas LP Couvreur, Gregory Mueller, Torsten Dikow, Kristofer M Helgen, Jiři Frank, Donat Agosti, David Roberts, Lyubomir Penev, None, Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal. Biodiversity Data Journal. ,vol. 1, pp. 1- 8 ,(2013) , 10.3897/BDJ.1.E995
Sujeevan Ratnasingham, Paul D. N. Hebert, A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE. ,vol. 8, pp. e66213- 16 ,(2013) , 10.1371/JOURNAL.PONE.0066213
Xin Zhou, Yiyuan Li, Shanlin Liu, Qing Yang, Xu Su, Lili Zhou, Min Tang, Ribei Fu, Jiguang Li, Quanfei Huang, Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification GigaScience. ,vol. 2, pp. 4- 4 ,(2013) , 10.1186/2047-217X-2-4
Alexander Riedel, Katayo Sagata, Yayuk R Suhardjono, Rene Tänzler, Michael Balke, Integrative taxonomy on the fast track - towards more sustainability in biodiversity research. Frontiers in Zoology. ,vol. 10, pp. 15- 15 ,(2013) , 10.1186/1742-9994-10-15