Accelerated molecular dynamics of infrequent events

作者: S. Pal , K.A. Fichthorn

DOI: 10.1016/S1385-8947(99)00055-8

关键词: Series (mathematics)Molecular dynamicsSurface diffusionScale (ratio)ChemistryPotential energy surfaceDiffusion (business)Maxima and minimaMolecular diffusionStatistical physics

摘要: Abstract Diffusion of molecules in and on solid substrates often occurs as a series hops between neighboring binding sites, or potential-energy minima. Simulation this type transport with molecular dynamics becomes challenging because the time exceeds times that can typically be probed computational technique. In paper, we discuss new method, which extends scale molecular-dynamics simulations, while retaining nearly precise dynamic detail. A simple two-dimensional model has been used to explore algorithm We also extension method more complicated system, involving diffusion Ag adatom (0 0 1) surface.

参考文章(24)
A. A. Gusev, F. Müller-Plathe, W. F. van Gunsteren, U. W. Suter, Dynamics of small molecules in bulk polymers Springer Berlin Heidelberg. pp. 207- 247 ,(1994) , 10.1007/BFB0080200
Peter E. Blöchl, C. G. Van de Walle, S. T. Pantelides, First-principles calculations of diffusion coefficients: Hydrogen in silicon. Physical Review Letters. ,vol. 64, pp. 1401- 1404 ,(1990) , 10.1103/PHYSREVLETT.64.1401
E.J. Dawnkaski, D. Srivastava, B.J. Garrison, Time-dependent Monte Carlo simulations of radical densities and distributions on the diamond {001} (2 × 1): H surface Chemical Physics Letters. ,vol. 232, pp. 524- 530 ,(1995) , 10.1016/0009-2614(94)01393-A
Arthur F. Voter, A Monte Carlo method for determining free‐energy differences and transition state theory rate constants Journal of Chemical Physics. ,vol. 82, pp. 1890- 1899 ,(1985) , 10.1063/1.448373
H. C. Kang, W. H. Weinberg, Dynamic Monte Carlo with a proper energy barrier: Surface diffusion and two‐dimensional domain ordering Journal of Chemical Physics. ,vol. 90, pp. 2824- 2830 ,(1989) , 10.1063/1.455932
M. M. Steiner, P.-A. Genilloud, J. W. Wilkins, Simple bias potential for boosting molecular dynamics with the hyperdynamics scheme Physical Review B. ,vol. 57, pp. 10236- 10239 ,(1998) , 10.1103/PHYSREVB.57.10236
F Lancon, L Billard, W Chambron, A Chamberod, Simulation of interstitial diffusion in an amorphous structure Journal of Physics F: Metal Physics. ,vol. 15, pp. 1485- 1496 ,(1985) , 10.1088/0305-4608/15/7/008
M. P. Allen, D. J. Tildesley, Computer Simulation of Liquids ,(1988)
E. M. Sevick, A. T. Bell, D. N. Theodorou, A chain of states method for investigating infrequent event processes occurring in multistate, multidimensional systems The Journal of Chemical Physics. ,vol. 98, pp. 3196- 3212 ,(1993) , 10.1063/1.464093