Chimeric DNA/LNA-based biosensor for the rapid detection of African swine fever virus

作者: Massimo Biagetti , Massimiliano Cuccioloni , Laura Bonfili , Valentina Cecarini , Carla Sebastiani

DOI: 10.1016/J.TALANTA.2018.02.095

关键词:

摘要: African swine fever (ASF) virus is a DNA responsible for severe haemorrhagic in pigs, which (still the absence of vaccination strategies) results high mortality rates. Herein, we present biosensor-based method detection ASF viral blood pigs. The biosensor exploits single-strand probe with locked nucleic acid nucleotides (LNA) substitutions as complementary recognition element conserved region vp72 gene virus. was calibrated using qPCR-quantified extracted from pigs experimentally infected virulent Italian isolate 49/08, genotype I. Globally, proposed showed good sensitivity and specificity, limits (LOD) quantification (LOQ) being 178 245 copies/μL genomic DNA, respectively. reversible nature interaction between DNA/LNA target sequence granted multiple rapid analyses, up to 40 analyses per single surface possible, test requiring approximately 5 min. When applied non-amplified extracts field-infected assay discriminated ASFV-infected ASFV non-infected animals, allowed values falling range 373-1058 DNA. In this range, excellent correlation observed OIE-approved qPCR. This represents promising screening preliminary diagnosis, having major advantages relative rapidity, ease-of-use, reusability sensing surface, low cost test.

参考文章(33)
C. Gallardo, R. Nieto, A. Soler, V. Pelayo, J. Fernández-Pinero, I. Markowska-Daniel, G. Pridotkas, I. Nurmoja, R. Granta, A. Simón, C. Pérez, E. Martín, P. Fernández-Pacheco, M. Arias, Assessment of African Swine Fever Diagnostic Techniques as a Response to the Epidemic Outbreaks in Eastern European Union Countries: How To Improve Surveillance and Control Programs Journal of Clinical Microbiology. ,vol. 53, pp. 2555- 2565 ,(2015) , 10.1128/JCM.00857-15
Teresa Lavecchia, Arianna Tibuzzi, Maria Teresa Giardi, Biosensors for Functional Food Safety and Analysis Advances in Experimental Medicine and Biology. ,vol. 698, pp. 267- 281 ,(2010) , 10.1007/978-1-4419-7347-4_20
Donald P King, Scott M Reid, Geoffrey H Hutchings, Sylvia S Grierson, Philip J Wilkinson, Linda K Dixon, Armanda D.S Bastos, Trevor W Drew, Development of a TaqMan® PCR assay with internal amplification control for the detection of African swine fever virus Journal of Virological Methods. ,vol. 107, pp. 53- 61 ,(2003) , 10.1016/S0166-0934(02)00189-1
Jesper J Sørensen, Jakob T Nielsen, Michael Petersen, None, Solution structure of a dsDNA:LNA triplex Nucleic Acids Research. ,vol. 32, pp. 6078- 6085 ,(2004) , 10.1093/NAR/GKH942
He Miao, Shi Han-chang, Zhou Xiao-hong, Liu Lan-hua, Xu Wei-qi, Song Bao-dong, Sheng Jian-wu, A reusable evanescent wave immunosensor for highly sensitive detection of bisphenol A in water samples Scientific Reports. ,vol. 4, pp. 4572- 4572 ,(2015) , 10.1038/SREP04572
Satoshi Obika, Yoshiyuki Hari, Ken-ichiro Morio, Takeshi Imanishi, Triplex formation by an oligonucleotide containing conformationally locked C-nucleoside, 5-(2-O,4-C-methylene-β-d-ribofuranosyl)oxazole Tetrahedron Letters. ,vol. 41, pp. 221- 224 ,(2000) , 10.1016/S0040-4039(99)02052-3
Zhou Xiao-hong, Song Bao-dong, Shi Han-chang, Liu Lan-hua, Guo Hong-li, He Miao, An evanescent wave multi-channel immunosensor system for the highly sensitive detection of small analytes in water samples Sensors and Actuators B-chemical. ,vol. 198, pp. 150- 156 ,(2014) , 10.1016/J.SNB.2014.02.106
Hidetaka Torigoe, Yoshiyuki Hari, Mitsuaki Sekiguchi, Satoshi Obika, Takeshi Imanishi, 2'-O,4'-C-methylene bridged nucleic acid modification promotes pyrimidine motif triplex DNA formation at physiological pH: thermodynamic and kinetic studies. Journal of Biological Chemistry. ,vol. 276, pp. 2354- 2360 ,(2001) , 10.1074/JBC.M007783200
R. Cush, J.M. Cronin, W.J. Stewart, C.H. Maule, J. Molloy, N.J. Goddard, The resonant mirror: a novel optical biosensor for direct sensing of biomolecular interactions Part I: Principle of operation and associated instrumentation Biosensors and Bioelectronics. ,vol. 8, pp. 347- 354 ,(1993) , 10.1016/0956-5663(93)80073-X