Investigating tumour evolution through graph theoretical analysis of gene regulatory networks

Kane O. Pryor, Jamie Sleigh, The Seven Bridges of Königsberg Anesthesiology. ,vol. 114, pp. 739- 740 ,(2011) , 10.1097/ALN.0B013E318210F580

Pieter J A Eichhorn, Laura Rodón, Alba Gonzàlez-Juncà, Annette Dirac, Magüi Gili, Elena Martínez-Sáez, Claudia Aura, Ignasi Barba, Vicente Peg, Aleix Prat, Isabel Cuartas, Jose Jimenez, David García-Dorado, Juan Sahuquillo, Réné Bernards, José Baselga, Joan Seoane, USP15 stabilizes TGF-β receptor I and promotes oncogenesis through the activation of TGF-β signaling in glioblastoma Nature Medicine. ,vol. 18, pp. 429- 435 ,(2012) , 10.1038/NM.2619

Scott A Armstrong, Ingo K Mellinghoff, F Stephen Hodi, Glenn Dranoff, Paul S Mischel, Tim F Cloughesy, Stan F Nelson, Linda M Liau, Kirsten Mertz, Mark A Rubin, Holger Moch, Massimo Loda, William Catalona, Jonathan Fletcher, Sabina Signoretti, Frederic Kaye, Kenneth C Anderson, George D Demetri, Reinhard Dummer, Stephan Wagner, Meenhard Herlyn, William R Sellers, Matthew Meyerson, Levi A Garraway, Roman K Thomas, Alissa C Baker, Ralph M DeBiasi, Wendy Winckler, Thomas LaFramboise, William M Lin, Meng Wang, Whei Feng, Thomas Zander, Laura E MacConaill, Jeffrey C Lee, Rick Nicoletti, Charlie Hatton, Mary Goyette, Luc Girard, Kuntal Majmudar, Liuda Ziaugra, Kwok-Kin Wong, Stacey Gabriel, Rameen Beroukhim, Michael Peyton, Jordi Barretina, Amit Dutt, Caroline Emery, Heidi Greulich, Kinjal Shah, Hidefumi Sasaki, Adi Gazdar, John Minna, High-throughput oncogene mutation profiling in human cancer Nature Genetics. ,vol. 39, pp. 347- 351 ,(2007) , 10.1038/NG1975

Qun Wang, Sharon Diskin, Eric Rappaport, Edward Attiyeh, Yael Mosse, Daniel Shue, Eric Seiser, Jayanti Jagannathan, Suzanne Shusterman, Manisha Bansal, Deepa Khazi, Cynthia Winter, Erin Okawa, Gregory Grant, Avital Cnaan, Huaqing Zhao, Nai-Kong Cheung, William Gerald, Wendy London, Katherine K. Matthay, Garrett M. Brodeur, John M. Maris, Integrative Genomics Identifies Distinct Molecular Classes of Neuroblastoma and Shows That Multiple Genes Are Targeted by Regional Alterations in DNA Copy Number Cancer Research. ,vol. 66, pp. 6050- 6062 ,(2006) , 10.1158/0008-5472.CAN-05-4618

Jeremy Goecks, Anton Nekrutenko, James Taylor, Galaxy Team team@ galaxyproject. org, Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences Genome Biology. ,vol. 11, pp. 1- 13 ,(2010) , 10.1186/GB-2010-11-8-R86

Cameron Brennan, Hiroyuki Momota, Dolores Hambardzumyan, Tatsuya Ozawa, Adesh Tandon, Alicia Pedraza, Eric Holland, Glioblastoma Subclasses Can Be Defined by Activity among Signal Transduction Pathways and Associated Genomic Alterations PLoS ONE. ,vol. 4, pp. e7752- ,(2009) , 10.1371/JOURNAL.PONE.0007752

Tao Zhou, Gang Yan, Bing-Hong Wang, Maximal planar networks with large clustering coefficient and power-law degree distribution. Physical Review E. ,vol. 71, pp. 046141- ,(2005) , 10.1103/PHYSREVE.71.046141

Jinghui Zhang, Claudia A Benavente, Justina McEvoy, Jacqueline Flores-Otero, Li Ding, Xiang Chen, Anatoly Ulyanov, Gang Wu, Matthew Wilson, Jianmin Wang, Rachel Brennan, Michael Rusch, Amity L Manning, Jing Ma, John Easton, Sheila Shurtleff, Charles Mullighan, Stanley Pounds, Suraj Mukatira, Pankaj Gupta, Geoff Neale, David Zhao, Charles Lu, Robert S Fulton, Lucinda L Fulton, Xin Hong, David J Dooling, Kerri Ochoa, Clayton Naeve, Nicholas J Dyson, Elaine R Mardis, Armita Bahrami, David Ellison, Richard K Wilson, James R Downing, Michael A Dyer, None, A novel retinoblastoma therapy from genomic and epigenetic analyses Nature. ,vol. 481, pp. 329- 334 ,(2012) , 10.1038/NATURE10733

H. Jeong, B. Tombor, R. Albert, Z. N. Oltvai, A.-L. Barabási, The large-scale organization of metabolic networks Nature. ,vol. 407, pp. 651- 654 ,(2000) , 10.1038/35036627

M. E. Higgins, M. Claremont, J. E. Major, C. Sander, A. E. Lash, CancerGenes: a gene selection resource for cancer genome projects Nucleic Acids Research. ,vol. 35, pp. 721- 726 ,(2007) , 10.1093/NAR/GKL811