Exploiting the Accumulated Evidence for Gene Selection in Microarray Gene Expression Data

作者: Lluís A. Belanche-Muòoz , Gabriel Prat-Masramon

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摘要: Feature subset selection (FSS) methods play an important role for cancer classification using microarray gene expression data. In this scenario, it is extremely to select genes by taking into account the possible interactions with other subsets. This paper shows that, accumulating evidence in favour (or against) each along a search process, obtained subsets may constitute better solutions, either terms of size or predictive accuracy, both, at negligible overhead computational cost.

参考文章(11)
Pat Langley, Selection of Relevant Features in Machine Learning national conference on artificial intelligence. pp. 1- 5 ,(1994) , 10.21236/ADA292575
Sandrine Dudoit, Jane Fridlyand, Terence P Speed, None, Comparison of discrimination methods for the classification of tumors using gene expression data Journal of the American Statistical Association. ,vol. 97, pp. 77- 87 ,(2002) , 10.1198/016214502753479248
U. Alon, N. Barkai, D. A. Notterman, K. Gish, S. Ybarra, D. Mack, A. J. Levine, Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays Proceedings of the National Academy of Sciences of the United States of America. ,vol. 96, pp. 6745- 6750 ,(1999) , 10.1073/PNAS.96.12.6745
Jin-Hyuk Hong, Sung-Bae Cho, Cancer classification with incremental gene selection based on DNA microarray data computational intelligence in bioinformatics and computational biology. pp. 70- 74 ,(2008) , 10.1109/CIBCB.2008.4675761
T. R. Golub, D. K. Slonim, P. Tamayo, C. Huard, M. Gaasenbeek, J. P. Mesirov, H. Coller, M. L. Loh, J. R. Downing, M. A. Caligiuri, C. D. Bloomfield, E. S. Lander, Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science. ,vol. 286, pp. 531- 537 ,(1999) , 10.1126/SCIENCE.286.5439.531
Laura J. van 't Veer, Hongyue Dai, Marc J. van de Vijver, Yudong D. He, Augustinus A. M. Hart, Mao Mao, Hans L. Peterse, Karin van der Kooy, Matthew J. Marton, Anke T. Witteveen, George J. Schreiber, Ron M. Kerkhoven, Chris Roberts, Peter S. Linsley, René Bernards, Stephen H. Friend, Gene expression profiling predicts clinical outcome of breast cancer Nature. ,vol. 415, pp. 530- 536 ,(2002) , 10.1038/415530A
Dinesh Singh, Phillip G Febbo, Kenneth Ross, Donald G Jackson, Judith Manola, Christine Ladd, Pablo Tamayo, Andrew A Renshaw, Anthony V D'Amico, Jerome P Richie, Eric S Lander, Massimo Loda, Philip W Kantoff, Todd R Golub, William R Sellers, None, Gene expression correlates of clinical prostate cancer behavior. Cancer Cell. ,vol. 1, pp. 203- 209 ,(2002) , 10.1016/S1535-6108(02)00030-2