Comparison of discrimination methods for the classification of tumors using gene expression data

作者: Sandrine Dudoit , Jane Fridlyand , Terence P Speed , None

DOI: 10.1198/016214502753479248

关键词: Computational biologyGeneCancerLinear discriminant analysisBoosting (machine learning)MicroarrayDNA microarraySupervised learningFeature selectionAlgorithm

摘要: … gene expression data is an important aspect of this novel approach to cancer classification. … discrimination methods for the classification of tumors based on gene expression data. The …

参考文章(32)
Michael PS Brown, William Noble Grundy, David Lin, Nello Cristianini, Charles Walsh Sugnet, Terrence S Furey, Manuel Ares Jr, David Haussler, None, Knowledge-based analysis of microarray gene expression data by using support vector machines Proceedings of the National Academy of Sciences of the United States of America. ,vol. 97, pp. 262- 267 ,(2000) , 10.1073/PNAS.97.1.262
T. R. Golub, D. K. Slonim, P. Tamayo, C. Huard, M. Gaasenbeek, J. P. Mesirov, H. Coller, M. L. Loh, J. R. Downing, M. A. Caligiuri, C. D. Bloomfield, E. S. Lander, Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science. ,vol. 286, pp. 531- 537 ,(1999) , 10.1126/SCIENCE.286.5439.531
N. L. Hjort, Brian D. Ripley, Pattern recognition and neural networks ,(1996)
David J. Lockhart, Helin Dong, Michael C. Byrne, Maximillian T. Follettie, Michael V. Gallo, Mark S. Chee, Michael Mittmann, Chunwei Wang, Michiko Kobayashi, Heidi Norton, Eugene L. Brown, Expression monitoring by hybridization to high density oligonucleotide arrays Nature Biotechnology. ,vol. 14, pp. 1675- 1680 ,(1996) , 10.1038/NBT1296-1675
Ash A. Alizadeh, Michael B. Eisen, R. Eric Davis, Chi Ma, Izidore S. Lossos, Andreas Rosenwald, Jennifer C. Boldrick, Hajeer Sabet, Truc Tran, Xin Yu, John I. Powell, Liming Yang, Gerald E. Marti, Troy Moore, James Hudson, Lisheng Lu, David B. Lewis, Robert Tibshirani, Gavin Sherlock, Wing C. Chan, Timothy C. Greiner, Dennis D. Weisenburger, James O. Armitage, Roger Warnke, Ronald Levy, Wyndham Wilson, Michael R. Grever, John C. Byrd, David Botstein, Patrick O. Brown, Louis M. Staudt, Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling Nature. ,vol. 403, pp. 503- 511 ,(2000) , 10.1038/35000501
M. B. Eisen, P. T. Spellman, P. O. Brown, D. Botstein, Cluster analysis and display of genome-wide expression patterns Proceedings of the National Academy of Sciences of the United States of America. ,vol. 95, pp. 14863- 14868 ,(1998) , 10.1073/PNAS.95.25.14863
C. M. Perou, S. S. Jeffrey, M. van de Rijn, C. A. Rees, M. B. Eisen, D. T. Ross, A. Pergamenschikov, C. F. Williams, S. X. Zhu, J. C. F. Lee, D. Lashkari, D. Shalon, P. O. Brown, D. Botstein, Distinctive gene expression patterns in human mammary epithelial cells and breast cancers Proceedings of the National Academy of Sciences of the United States of America. ,vol. 96, pp. 9212- 9217 ,(1999) , 10.1073/PNAS.96.16.9212
Jonathan R. Pollack, Charles M. Perou, Ash A. Alizadeh, Michael B. Eisen, Alexander Pergamenschikov, Cheryl F. Williams, Stefanie S. Jeffrey, David Botstein, Patrick O. Brown, Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nature Genetics. ,vol. 23, pp. 41- 46 ,(1999) , 10.1038/12640