Translation rate modification by preferential codon usage: intragenic position effects.

作者: Hans Liljenström , Gunnar von Heijne

DOI: 10.1016/S0022-5193(87)80251-5

关键词:

摘要: We present a model for calculating the protein production rate as function of translation rate. The takes into account that elongation along an mRNA molecule is non-uniform result different tRNA availabilities codons. Initiation ribosomes on normally rate-limiting step in process, and blocking initiation site can be avoided if codons closest to this allow fast by ribosome. Hence, selective forces may act choice synonymous region than elsewhere given mRNA. show whole influences abundant proteins, whereas only importance rare proteins. also analysis codon distribution known mRNAs coding

参考文章(29)
C.G. Kurland, Måns Ehrenberg, Optimization of translation accuracy Progress in Nucleic Acid Research and Molecular Biology. ,vol. 31, pp. 191- 219 ,(1984) , 10.1016/S0079-6603(08)60378-5
J.E. Bergmann, H.F. Lodish, A kinetic model of protein synthesis. Application to hemoglobin synthesis and translational control. Journal of Biological Chemistry. ,vol. 254, pp. 11927- 11937 ,(1979) , 10.1016/S0021-9258(19)86406-2
Stanislas Varenne, Jean Buc, Roland Lloubes, Claude Lazdunski, Translation is a non-uniform process: Effect of tRNA availability on the rate of elongation of nascent polypeptide chains Journal of Molecular Biology. ,vol. 180, pp. 549- 576 ,(1984) , 10.1016/0022-2836(84)90027-5
John L Ingraham, Ole Maaløe, Frederick Carl Neidhardt, Growth of the bacterial cell ,(1983)
S B Baim, D F Pietras, D C Eustice, F Sherman, A mutation allowing an mRNA secondary structure diminishes translation of Saccharomyces cerevisiae iso-1-cytochrome c Molecular and Cellular Biology. ,vol. 5, pp. 1839- 1846 ,(1985) , 10.1128/MCB.5.8.1839
Fons Bonekamp, Henrik Dalbtøge Andersen, Thorkild Christensen, Kaj Frank Jensen, Codon-defined ribosomal pausing in Escherichia coli detected by using the pyrE attenuator to probe the coupling between transcription and translation Nucleic Acids Research. ,vol. 13, pp. 4113- 4123 ,(1985) , 10.1093/NAR/13.11.4113
N. Kirby Alton, Daniel Vapnek, Nucleotide sequence analysis of the chloramphenicol resistance transposon Tn9. Nature. ,vol. 282, pp. 864- 869 ,(1979) , 10.1038/282864A0