A 35 kDa antigenic protein from Shigella flexneri: In silico structural and functional studies

作者: Roy Lee Yung-Hung , Asma Ismail , Theam Soon Lim , Yee Siew Choong , None

DOI: 10.1016/J.BBRC.2011.09.116

关键词:

摘要: Shigella flexneri serotype 2a is a major public health concern in the developing and under-developed countries which contributes to shigellosis endemic mortality. Thus, there an urgent need for rapid diagnostic test effective therapy disease management. Previous study showed that ∼35 kDa antigenic protein from S. potential biomarker. We therefore modelled three-dimensional structure of antigen probe its functionality could aid development antigen-based diagnostic. Results transmembrane consists OmpA OmpA-like domains. The domain beta-barrel embedded outer membrane with four surface-exposed extracellular loops. linked 17 amino acids linker located periplasmic. Docking peptidoglycan into groove might help catalyzing bacterial cell wall formation. Both domains are expected be involved virulence, structural stability, pathogenesis survival thus made 35 suitable This elucidation will also enable better identification epitope regions specific binders antigen.

参考文章(52)
Narayanan Eswar, David Eramian, Ben Webb, Min-Yi Shen, Andrej Sali, Protein structure modeling with MODELLER. Methods of Molecular Biology. ,vol. 426, pp. 145- 159 ,(2008) , 10.1007/978-1-60327-058-8_8
Roberto Sánchez, Ursula Pieper, Francisco Melo, Narayanan Eswar, Marc A. Martí-Renom, M.S. Madhusudhan, Nebojša Mirković, Andrej Šali, Protein structure modeling for structural genomics. Nature Structural & Molecular Biology. ,vol. 7, pp. 986- 990 ,(2000) , 10.1038/80776
Ashish Arora, Frits Abildgaard, John H. Bushweller, Lukas K. Tamm, Structure of outer membrane protein A transmembrane domain by NMR spectroscopy Nature Structural & Molecular Biology. ,vol. 8, pp. 334- 338 ,(2001) , 10.1038/86214
P. E. Makidon, J. Knowlton, J. V. Groom, L. P. Blanco, J. J. LiPuma, A. U. Bielinska, J. R. Baker, Induction of immune response to the 17 kDa OMPA Burkholderia cenocepacia polypeptide and protection against pulmonary infection in mice after nasal vaccination with an OMP nanoemulsion-based vaccine. Medical Microbiology and Immunology. ,vol. 199, pp. 81- 92 ,(2010) , 10.1007/S00430-009-0137-2
Ashish Arora, Dennis Rinehart, Gabor Szabo, Lukas K. Tamm, Refolded Outer Membrane Protein A of Escherichia coliForms Ion Channels with Two Conductance States in Planar Lipid Bilayers Journal of Biological Chemistry. ,vol. 275, pp. 1594- 1600 ,(2000) , 10.1074/JBC.275.3.1594
R. Grisshammer, C. G. Tateu, Overexpression of integral membrane proteins for structural studies Quarterly Reviews of Biophysics. ,vol. 28, pp. 315- 422 ,(1995) , 10.1017/S0033583500003504
R. A. Laskowski, M. W. MacArthur, D. S. Moss, J. M. Thornton, PROCHECK: a program to check the stereochemical quality of protein structures Journal of Applied Crystallography. ,vol. 26, pp. 283- 291 ,(1993) , 10.1107/S0021889892009944