Identifying the environmental factors that determine the genetic structure of populations.

作者: Matthieu Foll , Oscar Gaggiotti

DOI: 10.1534/GENETICS.106.059451

关键词:

摘要: The study of population genetic structure is a fundamental problem in biology because it helps us obtain deeper understanding the evolutionary process. One issues most assiduously studied this context assessment relative importance environmental factors (geographic distance, language, temperature, altitude, etc.) on populations. widely used method to address question multivariate Mantel test, nonparametric that calculates correlation coefficient between dependent matrix pairwise distances and one or more independent matrices differences. Here we present hierarchical Bayesian estimates FST values for each local relates them using generalized linear model. demonstrated by applying two data sets, set argan tree human comprising 51 populations distributed worldwide. We also carry out simulation investigate performance find can correctly identify play role structuring diversity under wide range scenarios.

参考文章(34)
David J Balding, Andrew D Carothers, Jonathan L Marchini, Lon R Cardon, Atam Vetta, Bob Griffiths, BS Weir, WG Hill, Darlene Goldstein, Korbinian Strimmer, Simon Myers, Mark A Beaumont, CA Glasbey, CD Mayer, Richard Durrett, Rasmus Nielsen, PM Visscher, SA Knott, CS Haley, Roderick D Ball, Christine A Hackett, Susan Holmes, Dirk Husmeier, Ritsert C Jansen, Cajo JF ter Braak, Chris A Maliepaard, Martin P Boer, Paul Joyce, Na Li, Matthew Stephens, George A Marcoulides, Zvi Drezner, Kanti Mardia, Gilean McVean, Xiao-Li Meng, Michael F Ochs, Mark Pagel, Naijun Sha, Marina Vannucci, Mikko J Sillanpää, Scott Sisson, Brian S Yandell, Chunfang Jin, Jaya M Satagopan, Patrick J Gaffney, Zhao-Bang Zeng, Karl W Broman, Terence P Speed, Paul Fearnhead, Peter Donnelly, Bret Larget, Donald L Simon, Joseph B Kadane, George Nicholson, Albert V Smith, Frosti Jónsson, Ómar Gústafsson, Kárl Stefánsson, Peter Donnelly, Giovanni Parmigiani, Elizabeth S Garrett, Ramaswamy Anbazhagan, Edward Gabrielson, Discussion on the meeting on 'Statistical modelling and analysis of genetic data' Journal of The Royal Statistical Society Series B-statistical Methodology. ,vol. 64, pp. 737- 775 ,(2002) , 10.1111/1467-9868.00359
ELI GEFFEN, MARTI J. ANDERSON, ROBERT K. WAYNE, Climate and habitat barriers to dispersal in the highly mobile grey wolf Molecular Ecology. ,vol. 13, pp. 2481- 2490 ,(2004) , 10.1111/J.1365-294X.2004.02244.X
A. Piazza, P. Menozzi, L. L. Cavalli-Sforza, Synthetic gene frequency maps of man and selective effects of climate. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 78, pp. 2638- 2642 ,(1981) , 10.1073/PNAS.78.4.2638
S. Ramachandran, O. Deshpande, C. C. Roseman, N. A. Rosenberg, M. W. Feldman, L. L. Cavalli-Sforza, Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa Proceedings of the National Academy of Sciences of the United States of America. ,vol. 102, pp. 15942- 15947 ,(2005) , 10.1073/PNAS.0507611102
Pierre Legendre, Comparison of permutation methods for the partial correlation and partial mantel tests Journal of Statistical Computation and Simulation. ,vol. 67, pp. 37- 73 ,(2000) , 10.1080/00949650008812035
Joseph Felsenstein, Phylogenies and the Comparative Method The American Naturalist. ,vol. 125, pp. 1- 15 ,(1985) , 10.1086/284325
Peter E. Smouse, Jeffrey C. Long, Robert R. Sokal, Multiple regression and correlation extensions of the mantel test of matrix correspondence Systematic Biology. ,vol. 35, pp. 627- 632 ,(1986) , 10.2307/2413122
David J. Balding, Likelihood-based inference for genetic correlation coefficients. Theoretical Population Biology. ,vol. 63, pp. 221- 230 ,(2003) , 10.1016/S0040-5809(03)00007-8