On the existence of the H3 tautomer of adenine in aqueous solution. Rationalizations based on hybrid quantum mechanics/molecular mechanics predictions.

作者: Kęstutis Aidas , Kurt V. Mikkelsen , Jacob Kongsted

DOI: 10.1039/B915604F

关键词:

摘要: The 15N NMR spectrum of adenine in aqueous solution has been modeled using high-level combined density functional theory/molecular mechanics techniques coupled to a dynamical averaging scheme. explicit consideration the three lowest-energy tautomers adenine—H9, H7 and H3—allows for well-founded comparison experimental data. Based on very good agreement between predicted measured adenine, we have estimated populations H9 be around 83 17%, respectively—in with data—and thus concluded that H3 tautomer is likely not formed solution. In addition also 13C 2J(15N–H) indirect spin–spin coupling constants. Finally calculated rationalized general shape low-resolution UV absorption water.

参考文章(70)
Kestutis Aidas, Andreas Møgelhøj, Elna J. K. Nilsson, Matthew S. Johnson, Kurt V. Mikkelsen, Ove Christiansen, Pär Söderhjelm, Jacob Kongsted, On the performance of quantum chemical methods to predict solvatochromic effects: the case of acrolein in aqueous solution. Journal of Chemical Physics. ,vol. 128, pp. 194503- 194503 ,(2008) , 10.1063/1.2918537
Sittipong Komin, Christian Gossens, Ivano Tavernelli, Ursula Rothlisberger, Daniel Sebastiani, NMR Solvent Shifts of Adenine in Aqueous Solution from Hybrid QM/MM Molecular Dynamics Simulations Journal of Physical Chemistry B. ,vol. 111, pp. 5225- 5232 ,(2007) , 10.1021/JP067263L
Paweł Sałek, Olav Vahtras, Trygve Helgaker, Hans Ågren, Density-functional theory of linear and nonlinear time-dependent molecular properties Journal of Chemical Physics. ,vol. 117, pp. 9630- 9645 ,(2002) , 10.1063/1.1516805
R. A. Kendall, thom H. Dunning, Jr., Robert J. Harrison, Electron affinities of the first-row atoms revisited. Systematic basis sets and wave functions Journal of Chemical Physics. ,vol. 96, pp. 6796- 6806 ,(1992) , 10.1063/1.462569
Benedetta Mennucci, Alessandro Toniolo, Jacopo Tomasi, Theoretical Study of the Photophysics of Adenine in Solution: Tautomerism, Deactivation Mechanisms, and Comparison with the 2-Aminopurine Fluorescent Isomer Journal of Physical Chemistry A. ,vol. 105, pp. 4749- 4757 ,(2001) , 10.1021/JP0045843
Philip J. Wilson, Thomas J. Bradley, David J. Tozer, Hybrid exchange-correlation functional determined from thermochemical data and ab initio potentials Journal of Chemical Physics. ,vol. 115, pp. 9233- 9242 ,(2001) , 10.1063/1.1412605
D. Voet, W. B. Gratzer, R. A. Cox, Paul Doty, Absorption spectra of nucleotides, polynucleotides, and nucleic acids in the far ultraviolet Biopolymers. ,vol. 1, pp. 193- 208 ,(1963) , 10.1002/BIP.360010302
Thomas M. Nymand, Per Linse, Ewald summation and reaction field methods for potentials with atomic charges, dipoles, and polarizabilities Journal of Chemical Physics. ,vol. 112, pp. 6152- 6160 ,(2000) , 10.1063/1.481216
Jacopo Tomasi, Benedetta Mennucci, Roberto Cammi, Quantum Mechanical Continuum Solvation Models Chemical Reviews. ,vol. 105, pp. 2999- 3094 ,(2005) , 10.1021/CR9904009