Dynamic DNA Origami Device for Measuring Compressive Depletion Forces

作者: Michael W. Hudoba , Yi Luo , Angelita Zacharias , Michael G. Poirier , Carlos E. Castro

DOI: 10.1021/ACSNANO.6B07097

关键词:

摘要: The ability to self-assemble nanodevices with programmed structural dynamics that can sense and respond the local environment could enable transformative applications in fields including molecular robotics, nanomanufacturing, nanomedicine. responsive function of biomolecules is often driven by alterations conformational distributions mediated highly sensitive interactions environment. Here, we mimic this approach engineering inherent nanoscale (nanodynamics) into a DNA device exhibits distribution conformations two stable states separated transition state where energy barrier height on scale thermal energy, kBT = 4.1 pN·nm, enabling spontaneous transitions between states. We further establish design principles regulate equilibrium kinetic behavior substituting few strand components. use single-molecule Forster resonance transfer measurements show these nanodynamic properties a...

参考文章(42)
Bernard Yurke, Andrew J. Turberfield, Allen P. Mills, Friedrich C. Simmel, Jennifer L. Neumann, A DNA-fuelled molecular machine made of DNA Nature. ,vol. 406, pp. 605- 608 ,(2000) , 10.1038/35020524
Jonas J. Funke, Hendrik Dietz, Placing molecules with Bohr radius resolution using DNA origami Nature Nanotechnology. ,vol. 11, pp. 47- 52 ,(2016) , 10.1038/NNANO.2015.240
C. Leduc, K. Padberg-Gehle, V. Varga, D. Helbing, S. Diez, J. Howard, Molecular crowding creates traffic jams of kinesin motors on microtubules Proceedings of the National Academy of Sciences of the United States of America. ,vol. 109, pp. 6100- 6105 ,(2012) , 10.1073/PNAS.1107281109
Shawn M. Douglas, Hendrik Dietz, Tim Liedl, Björn Högberg, Franziska Graf, William M. Shih, Self-assembly of DNA into nanoscale three-dimensional shapes Nature. ,vol. 459, pp. 414- 418 ,(2009) , 10.1038/NATURE08016
Ralf Jungmann, Maier S Avendaño, Johannes B Woehrstein, Mingjie Dai, William M Shih, Peng Yin, Multiplexed 3D cellular super-resolution imaging with DNA-PAINT and Exchange-PAINT Nature Methods. ,vol. 11, pp. 313- 318 ,(2014) , 10.1038/NMETH.2835
David Yu Zhang, Georg Seelig, Dynamic DNA nanotechnology using strand-displacement reactions Nature Chemistry. ,vol. 3, pp. 103- 113 ,(2011) , 10.1038/NCHEM.957
Shelley F. J. Wickham, Masayuki Endo, Yousuke Katsuda, Kumi Hidaka, Jonathan Bath, Hiroshi Sugiyama, Andrew J. Turberfield, Direct observation of stepwise movement of a synthetic molecular transporter Nature Nanotechnology. ,vol. 6, pp. 166- 169 ,(2011) , 10.1038/NNANO.2010.284
Dongran Han, Suchetan Pal, Yan Liu, Hao Yan, Folding and cutting DNA into reconfigurable topological nanostructures Nature Nanotechnology. ,vol. 5, pp. 712- 717 ,(2010) , 10.1038/NNANO.2010.193
Souvik Modi, Clément Nizak, Sunaina Surana, Saheli Halder, Yamuna Krishnan, Two DNA nanomachines map pH changes along intersecting endocytic pathways inside the same cell Nature Nanotechnology. ,vol. 8, pp. 459- 467 ,(2013) , 10.1038/NNANO.2013.92
Bishnu P. Paudel, David Rueda, Molecular Crowding Accelerates Ribozyme Docking and Catalysis Journal of the American Chemical Society. ,vol. 136, pp. 16700- 16703 ,(2014) , 10.1021/JA5073146