miRNA Profiling of Naïve, Effector and Memory CD8 T Cells

作者: Haoquan Wu , Joel R. Neilson , Priti Kumar , Monika Manocha , Premlata Shankar

DOI: 10.1371/JOURNAL.PONE.0001020

关键词:

摘要: microRNAs have recently emerged as master regulators of gene expression during development and cell differentiation. Although profound changes in also occur antigen-induced T differentiation, the role miRNAs process is not known. We compared miRNA profiles between antigen-specific naive, effector memory CD8+ cells using 3 different methods-small RNA cloning, microarray analysis real-time PCR. many were expressed all subsets, frequency 7 (miR-16, miR-21, miR-142-3p, miR-142-5p, miR-150, miR-15b let-7f) alone accounted for ∼60% miRNAs, their was several fold higher than other miRNAs. Global downregulation (including 6/7 dominantly miRNAs) observed to naive levels tended come back up cells. However, a few notably miR-21 These results suggest that concomitant with expression, profile dynamically Sequence cloned mature revealed an extensive degree end polymorphism. While 3′end polymorphisms dominated, heterogeneity at both ends, resembling drosha/dicer processing shift seen miR-142, suggesting possible novel mechanism generate new and/or diversify target selection. Overall, our dynamic may be important regulation Our study suggests mechanisms biogenesis function.

参考文章(53)
MicroRNA in chronic lymphocytic leukemia. The New England Journal of Medicine. ,vol. 354, pp. 524- ,(2006) , 10.1056/NEJMC053266
Silvia Monticelli, K Mark Ansel, Changchun Xiao, Nicholas D Socci, Anna M Krichevsky, To-Ha Thai, Nikolaus Rajewsky, Debora S Marks, Chris Sander, Klaus Rajewsky, Anjana Rao, Kenneth S Kosik, MicroRNA profiling of the murine hematopoietic system Genome Biology. ,vol. 6, pp. 1- 15 ,(2005) , 10.1186/GB-2005-6-8-R71
Mariana Lagos-Quintana, Reinhard Rauhut, Abdullah Yalcin, Jutta Meyer, Winfried Lendeckel, Thomas Tuschl, Identification of tissue-specific microRNAs from mouse Current Biology. ,vol. 12, pp. 735- 739 ,(2002) , 10.1016/S0960-9822(02)00809-6
Valerio Fulci, Sabina Chiaretti, Marina Goldoni, Gianluca Azzalin, Nicoletta Carucci, Simona Tavolaro, Leandro Castellano, Armando Magrelli, Franca Citarella, Monica Messina, Roberta Maggio, Nadia Peragine, Simona Santangelo, Francesca Romana Mauro, Pablo Landgraf, Thomas Tuschl, David B. Weir, Minchen Chien, James J. Russo, Jingyue Ju, Robert Sheridan, Chris Sander, Mihaela Zavolan, Anna Guarini, Robin Foà, Giuseppe Macino, Quantitative technologies establish a novel microRNA profile of chronic lymphocytic leukemia. Blood. ,vol. 109, pp. 4944- 4951 ,(2007) , 10.1182/BLOOD-2006-12-062398
Hristo B Houbaviy, Michael F Murray, Phillip A Sharp, Embryonic Stem Cell-Specific MicroRNAs Developmental Cell. ,vol. 5, pp. 351- 358 ,(2003) , 10.1016/S1534-5807(03)00227-2
Lee P. Lim, Nelson C. Lau, Philip Garrett-Engele, Andrew Grimson, Janell M. Schelter, John Castle, David P. Bartel, Peter S. Linsley, Jason M. Johnson, Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs Nature. ,vol. 433, pp. 769- 773 ,(2005) , 10.1038/NATURE03315
Yoontae Lee, Chiyoung Ahn, Jinju Han, Hyounjeong Choi, Jaekwang Kim, Jeongbin Yim, Junho Lee, Patrick Provost, Olof Rådmark, Sunyoung Kim, V. Narry Kim, The nuclear RNase III Drosha initiates microRNA processing Nature. ,vol. 425, pp. 415- 419 ,(2003) , 10.1038/NATURE01957
Erik J. Sontheimer, Richard W. Carthew, Silence from within: Endogenous siRNAs and miRNAs Cell. ,vol. 122, pp. 9- 12 ,(2005) , 10.1016/J.CELL.2005.06.030
Rui Yi, Yi Qin, Ian G Macara, Bryan R Cullen, Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs Genes & Development. ,vol. 17, pp. 3011- 3016 ,(2003) , 10.1101/GAD.1158803