Single nucleotide polymorphism array analysis of bone marrow failure patients reveals characteristic patterns of genetic changes.

作者: Daria V Babushok , Hongbo M Xie , Jacquelyn J Roth , Nieves Perdigones , Timothy S Olson

DOI: 10.1111/BJH.12603

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摘要: The bone marrow failure syndromes (BMFS) are a heterogeneous group of rare blood disorders characterized by inadequate haematopoiesis, clonal evolution, and increased risk leukaemia. Single nucleotide polymorphism arrays (SNP-A) have been proposed as tool for surveillance evolution in BMFS. To better understand the natural history BMFS to assess clinical utility SNP-A these disorders, we analysed 124 from comprehensively cohort 91 patients at our centre. were correlated with medical histories, haematopathology, cytogenetic molecular data. longitudinal analysis was performed 25 patients. We found that acquired copy number-neutral loss heterozygosity (CN-LOH) significantly more frequent aplastic anaemia (aAA) than other (odds ratio 12.2, p<0.01). Homozygosity descent most common congenital BMFS, frequently unmasking autosomal recessive mutations. Copy number variants (CNVs) polymorphic, identified CNVs enriched neutropenia aAA. Our results suggest CN-LOH is general phenomenon aAA probably mechanistically prognostically distinct typical myeloid malignancies. shows highest yield detecting new haematopoiesis diagnosis relapse.

参考文章(20)
Yigal Dror, Peter Durie, Hedy Ginzberg, Rebecca Herman, Anu Banerjee, Martin Champagne, Kevin Shannon, David Malkin, Melvin H Freedman, Clonal evolution in marrows of patients with Shwachman-Diamond syndrome: A prospective 5-year follow-up study Experimental Hematology. ,vol. 30, pp. 659- 669 ,(2002) , 10.1016/S0301-472X(02)00815-9
Blanche P. Alter, Neelam Giri, Sharon A. Savage, June A. Peters, Jennifer T. Loud, Lisa Leathwood, Ann G. Carr, Mark H. Greene, Philip S. Rosenberg, Malignancies and survival patterns in the National Cancer Institute inherited bone marrow failure syndromes cohort study. British Journal of Haematology. ,vol. 150, pp. 179- 188 ,(2010) , 10.1111/J.1365-2141.2010.08212.X
Xiaowu Gai, Juan C Perin, Kevin Murphy, Ryan O'Hara, Monica D'arcy, Adam Wenocur, Hongbo M Xie, Eric F Rappaport, Tamim H Shaikh, Peter S White, None, CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics. BMC Bioinformatics. ,vol. 11, pp. 74- 74 ,(2010) , 10.1186/1471-2105-11-74
A. G. Smith, W. Fan, L. Regen, S. Warnock, M. Sprague, R. Williams, B. Nisperos, L. P. Zhao, M. R. Loken, J. A. Hansen, S. Pereira, Somatic mutations in the HLA genes of patients with hematological malignancy. Tissue Antigens. ,vol. 79, pp. 359- 366 ,(2012) , 10.1111/J.1399-0039.2012.01868.X
Akiko Shimamura, Blanche P. Alter, Pathophysiology and management of inherited bone marrow failure syndromes Blood Reviews. ,vol. 24, pp. 101- 122 ,(2010) , 10.1016/J.BLRE.2010.03.002
Holger Tönnies, Stefanie Huber, Jörn-Sven Kühl, Antje Gerlach, Wolfram Ebell, Heidemarie Neitzel, Clonal chromosomal aberrations in bone marrow cells of Fanconi anemia patients: gains of the chromosomal segment 3q26q29 as an adverse risk factor. Blood. ,vol. 101, pp. 3872- 3874 ,(2003) , 10.1182/BLOOD-2002-10-3243
Saskia van der Crabben, Ellen van Binsbergen, Margreet Ausems, Martin Poot, Marc Bierings, Arjan Buijs, Constitutional RUNX1 deletion presenting as non-syndromic thrombocytopenia with myelodysplasia: 21q22 ITSN1 as a candidate gene in mental retardation Leukemia Research. ,vol. 34, ,(2010) , 10.1016/J.LEUKRES.2009.06.030
Neal S. Young, Rodrigo T. Calado, Phillip Scheinberg, Current concepts in the pathophysiology and treatment of aplastic anemia Blood. ,vol. 108, pp. 2509- 2519 ,(2006) , 10.1182/BLOOD-2006-03-010777
Samuel Quentin, Wendy Cuccuini, Raphael Ceccaldi, Olivier Nibourel, Corinne Pondarre, Marie-Pierre Pagès, Nadia Vasquez, Catherine Dubois d'Enghien, Jérôme Larghero, Régis Peffault de Latour, Vanderson Rocha, Jean-Hugues Dalle, Pascale Schneider, Mauricette Michallet, Gérard Michel, André Baruchel, François Sigaux, Eliane Gluckman, Thierry Leblanc, Dominique Stoppa-Lyonnet, Claude Preudhomme, Gérard Socié, Jean Soulier, Myelodysplasia and leukemia of Fanconi anemia are associated with a specific pattern of genomic abnormalities that includes cryptic RUNX1/AML1 lesions Blood. ,vol. 117, pp. e161- e170 ,(2011) , 10.1182/BLOOD-2010-09-308726
Helen C Su, Dedicator of cytokinesis 8 (DOCK8) deficiency. Current Opinion in Allergy and Clinical Immunology. ,vol. 10, pp. 515- 520 ,(2010) , 10.1097/ACI.0B013E32833FD718