Advanced technologies for studies on protein interactomes.

作者: Endre Kiss-Toth , Hongtao Guan

DOI: 10.1007/10_2007_092

关键词:

摘要: One of the key challenges biology in post-genomic era is to assign function many genesrevealed by large-scale sequencing programmes, since only a small fraction gene can bedirectly inferred from coding sequence. Identifying interactions between proteins substantialpart understanding their function. The main technologies for investigating protein–protein interactionsand assigning functions include direct detection intermolecular through proteinmicroarray, yeast two-hybrid system, mass spectrometry fluorescent techniques visualize protein complexesor pull-down assays, as well detecting functional genes, such RNAiknock down or screening cDNA libraries. Over recent years, considerable advances have beenmade above techniques. In this review, we discuss some developments and impact on thegene annotation.

参考文章(85)
Ingrid Remy, Stephen W. Michnick, Mapping biochemical networks with protein-fragment complementation assays. Methods of Molecular Biology. ,vol. 1278, pp. 467- 481 ,(2015) , 10.1385/1-59259-762-9:411
Charlotte Rohde Knudsen, Mandana Jadidi, Irene Friis, Francisco Mansilla, Application of the yeast two-hybrid system in molecular gerontology. Biogerontology. ,vol. 3, pp. 243- 256 ,(2002) , 10.1023/A:1016219121897
Karen McGinnis, Vicki Chandler, Karen Cone, Heidi Kaeppler, Shawn Kaeppler, Arthur Kerschen, Craig Pikaard, Eric Richards, Lyudmila Sidorenko, Todd Smith, Nathan Springer, Tuya Wulan, Transgene-Induced RNA Interference as a Tool for Plant Functional Genomics Methods in Enzymology. ,vol. 392, pp. 1- 24 ,(2005) , 10.1016/S0076-6879(04)92001-0
Kenneth J. Woycechowsky, Katherina Vamvaca, Donald Hilvert, Novel enzymes through design and evolution. Advances in Enzymology and Related Areas of Molecular Biology. ,vol. 75, pp. 241- 294 ,(2007) , 10.1002/9780471224464.CH4
Andrew Fire, SiQun Xu, Mary K. Montgomery, Steven A. Kostas, Samuel E. Driver, Craig C. Mello, Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans Nature. ,vol. 391, pp. 806- 811 ,(1998) , 10.1038/35888
A Aronheim, E Zandi, H Hennemann, S J Elledge, M Karin, Isolation of an AP-1 repressor by a novel method for detecting protein-protein interactions. Molecular and Cellular Biology. ,vol. 17, pp. 3094- 3102 ,(1997) , 10.1128/MCB.17.6.3094
Ravi S Kamath, Maruxa Martinez-Campos, Peder Zipperlen, Andrew G Fraser, Julie Ahringer, Effectiveness of specific RNA-mediated interference through ingested double-stranded RNA in Caenorhabditis elegans Genome Biology. ,vol. 2, pp. 1- 10 ,(2000) , 10.1186/GB-2000-2-1-RESEARCH0002
Marta Muzio, Jian Ni, Ping Feng, Vishva M. Dixit, IRAK (Pelle) Family Member IRAK-2 and MyD88 as Proximal Mediators of IL-1 Signaling Science. ,vol. 278, pp. 1612- 1615 ,(1997) , 10.1126/SCIENCE.278.5343.1612
Lee P Lim, Margaret E Glasner, Soraya Yekta, Christopher B Burge, David P Bartel, Vertebrate microRNA genes. Science. ,vol. 299, pp. 1540- 1540 ,(2003) , 10.1126/SCIENCE.1080372