Extreme genomic variation in a natural population

作者: Arend Sidow , Matthew M. Hill , Kerrin S. Small , Michael Brudno

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摘要: Whole-genome sequence data from samples of natural populations provide fertile grounds for analyses intraspecific variation and tests population genetic theory. We show that the urochordate Ciona savignyi, one species ocean-dwelling broadcast spawners commonly known as sea squirts, exhibits highest rates single-nucleotide structural polymorphism ever comprehensively quantified in a multicellular organism. demonstrate cause extreme heterozygosity is large effective size, and, consistent with prediction by neutral theory, we find evidence strong purifying selection. These results constitute in-depth insight into dynamics highly polymorphic genomes important empirical support theory it pertains to heterozygosity,

参考文章(29)
Carolyn Hendrickson, Lionel Christiaen, Karine Deschet, Di Jiang, Jean-Stéphane Joly, Laurent Legendre, Yuki Nakatani, Jason Tresser, William C. Smith, Culture of adult ascidians and ascidian genetics. Methods in Cell Biology. ,vol. 74, pp. 143- 170 ,(2004) , 10.1016/S0091-679X(04)74007-8
Daniel L. Hartl, Andrew G. Clark, Principles of population genetics ,(1980)
Chimpanzee Sequencing and Analysis Consortium Waterson Robert H. waterston@ gs. washington. edu Lander Eric S. lander@ broad. mit. edu Wilson Richard K. rwilson@ watson. wustl. edu, None, Initial sequence of the chimpanzee genome and comparison with the human genome Nature. ,vol. 437, pp. 69- 87 ,(2005) , 10.1038/NATURE04072
Jonathan K. Pritchard, Molly Przeworski, Linkage Disequilibrium in Humans: Models and Data American Journal of Human Genetics. ,vol. 69, pp. 1- 14 ,(2001) , 10.1086/321275
TOMOKO OHTA, Slightly deleterious mutant substitutions in evolution. Nature. ,vol. 246, pp. 96- 98 ,(1973) , 10.1038/246096A0
Justin C. Fay, Gerald J. Wyckoff, Chung-I Wu, Testing the neutral theory of molecular evolution with genomic data from Drosophila Nature. ,vol. 415, pp. 1024- 1026 ,(2002) , 10.1038/4151024A
Eray Tuzun, Andrew J Sharp, Jeffrey A Bailey, Rajinder Kaul, V Anne Morrison, Lisa M Pertz, Eric Haugen, Hillary Hayden, Donna Albertson, Daniel Pinkel, Maynard V Olson, Evan E Eichler, Fine-scale structural variation of the human genome Nature Genetics. ,vol. 37, pp. 727- 732 ,(2005) , 10.1038/NG1562
E. N. Moriyama, J. R. Powell, Intraspecific nuclear DNA variation in Drosophila. Molecular Biology and Evolution. ,vol. 13, pp. 261- 277 ,(1996) , 10.1093/OXFORDJOURNALS.MOLBEV.A025563
David E. Reich, Stephen F. Schaffner, Mark J. Daly, Gil McVean, James C. Mullikin, John M. Higgins, Daniel J. Richter, Eric S. Lander, David Altshuler, Human genome sequence variation and the influence of gene history, mutation and recombination. Nature Genetics. ,vol. 32, pp. 135- 142 ,(2002) , 10.1038/NG947
Di Jiang, Edwin M. Munro, William C. Smith, Ascidian prickle regulates both mediolateral and anterior-posterior cell polarity of notochord cells. Current Biology. ,vol. 15, pp. 79- 85 ,(2005) , 10.1016/J.CUB.2004.12.041