Identification of a functional docking site in the Rpn1 LRR domain for the UBA-UBL domain protein Ddi1

作者: Tara A Gomez , Natalie Kolawa , Marvin Gee , Michael J Sweredoski , Raymond J Deshaies

DOI: 10.1186/1741-7007-9-33

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摘要: Background: The proteasome is a multi-subunit protein machine that the final destination for cellular proteins have been marked degradation via an ubiquitin (Ub) chain appendage. These ubiquitylated either bind directly to intrinsic ubiqutin receptors Rpn10, Rpn13, or Rpt5, are shuttled by Rad23, Dsk2, Ddi1. latter share Ub association domain (UBA) binding poly-Ub chains and Ub-like-domain (UBL) proteasome. It has proposed shuttling dock on Rpn1, but precise nature of docking site remains poorly defined. Results: To shed light recruitment proteasome, we performed both sitedirected mutagenesis genetic screening identify mutations in Rpn1 disrupt its UBA-UBL proteins. Here demonstrate delivery conjugates Ddi1 (and lesser extent Dsk2) strongly impaired aspartic acid alanine point mutation highly-conserved D517 residue Rpn1. Moreover, Ddi1-dependent substrate, Ufo1, blocked rpn1D517A yeast cells. By contrast, Rad23 not affected rpn1-D517A. Conclusions: studies provide insight into mechanism which recruited enable Ub-dependent ligands. Our suggest different distinct mechanisms.

参考文章(62)
Andrei Lupas, Wolfgang Baumeister, Kay Hofmann, A repetitive sequence in subunits of the 26S proteasome and 20S cyclosome (anaphase-promoting complex). Trends in Biochemical Sciences. ,vol. 22, pp. 195- 196 ,(1997) , 10.1016/S0968-0004(97)01058-X
Suzanne Elsasser, Marion Schmidt, Daniel Finley, Characterization of the proteasome using native gel electrophoresis Methods in Enzymology. ,vol. 398, pp. 353- 363 ,(2005) , 10.1016/S0076-6879(05)98029-4
Caroline R.M. Wilkinson, Michael Seeger, Rasmus Hartmann-Petersen, Miranda Stone, Mairi Wallace, Colin Semple, Colin Gordon, Proteins containing the UBA domain are able to bind to multi-ubiquitin chains. Nature Cell Biology. ,vol. 3, pp. 939- 943 ,(2001) , 10.1038/NCB1001-939
Bonnie L. Bertolaet, Duncan J. Clarke, Meira Wolff, Mark H. Watson, Martha Henze, Gilles Divita, Steven I. Reed, UBA domains of DNA damage-inducible proteins interact with ubiquitin. Nature Structural & Molecular Biology. ,vol. 8, pp. 417- 422 ,(2001) , 10.1038/87575
Antony S. Fatimababy, Ya-Ling Lin, Raju Usharani, Ramalingam Radjacommare, Hsing-Ting Wang, Hwang-Long Tsai, Yenfen Lee, Hongyong Fu, Cross-species divergence of the major recognition pathways of ubiquitylated substrates for ubiquitin/26S proteasome-mediated proteolysis FEBS Journal. ,vol. 277, pp. 796- 816 ,(2010) , 10.1111/J.1742-4658.2009.07531.X
Yasushi Saeki, Aki Saitoh, Akio Toh-e, Hideyoshi Yokosawa, Ubiquitin-like proteins and Rpn10 play cooperative roles in ubiquitin-dependent proteolysis. Biochemical and Biophysical Research Communications. ,vol. 293, pp. 986- 992 ,(2002) , 10.1016/S0006-291X(02)00340-6
Mark S. Longtine, Amos Mckenzie III, Douglas J. Demarini, Nirav G. Shah, Achim Wach, Arndt Brachat, Peter Philippsen, John R. Pringle, Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae Yeast. ,vol. 14, pp. 953- 961 ,(1998) , 10.1002/(SICI)1097-0061(199807)14:10<953::AID-YEA293>3.0.CO;2-U
Hongyong Fu, Seth Sadis, David M. Rubin, Michael Glickman, Steven van Nocker, Daniel Finley, Richard D. Vierstra, Multiubiquitin Chain Binding and Protein Degradation Are Mediated by Distinct Domains within the 26 S Proteasome Subunit Mcb1 Journal of Biological Chemistry. ,vol. 273, pp. 1970- 1981 ,(1998) , 10.1074/JBC.273.4.1970
L. Fowden, M.H. Richmond, Replacement of proline by azetidine-2-carboxylic acid during biosynthesis of protein Biochimica et Biophysica Acta. ,vol. 71, pp. 459- 461 ,(1963) , 10.1016/0006-3002(63)91104-1