Facilitating a culture of responsible and effective sharing of cancer genome data.

作者: Lillian L Siu , Mark Lawler , David Haussler , Bartha Maria Knoppers , Jeremy Lewin

DOI: 10.1038/NM.4089

关键词:

摘要: Rapid and affordable tumor molecular profiling has led to an explosion of clinical genomic data poised enhance the diagnosis, prognostication treatment cancer. A critical point now been reached at which analysis storage annotated information in unconnected silos will stall advancement precision cancer care. Information systems must be harmonized overcome multiple technical logistical barriers sharing. Against this backdrop, Global Alliance for Genomic Health (GA4GH) was established 2013 create a common framework that enables responsible, voluntary secure sharing data. This Perspective from GA4GH Clinical Working Group Cancer Task Team highlights data-aggregation challenges faced by field, suggests potential collaborative solutions describes how can catalyze data-sharing culture.

参考文章(57)
Zhen Lin, Art B Owen, Russ B Altman, Genomic Research and Human Subject Privacy Science. ,vol. 305, pp. 183- 183 ,(2004) , 10.1126/SCIENCE.1095019
Kurt D Christensen, Jason L Vassy, Leila Jamal, Lisa Soleymani Lehmann, Melody J Slashinski, Denise L Perry, Jill O Robinson, Jennifer Blumenthal‐Barby, Lindsay Z Feuerman, Michael F Murray, Robert C Green, Amy L McGuire, MedSeq Project Team, Are physicians prepared for whole genome sequencing? a qualitative analysis Clinical Genetics. ,vol. 89, pp. 228- 234 ,(2016) , 10.1111/CGE.12626
Susanne B Haga, Laura M Beskow, None, Ethical, legal, and social implications of biobanks for genetics research. Advances in Genetics. ,vol. 60, pp. 505- 544 ,(2008) , 10.1016/S0065-2660(07)00418-X
Tudor Groza, Sebastian Köhler, Dawid Moldenhauer, Nicole Vasilevsky, Gareth Baynam, Tomasz Zemojtel, Lynn Marie Schriml, Warren Alden Kibbe, Paul N Schofield, Tim Beck, Drashtti Vasant, Anthony J Brookes, Andreas Zankl, Nicole L Washington, Christopher J Mungall, Suzanna E Lewis, Melissa A Haendel, Helen Parkinson, Peter N Robinson, None, The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease American Journal of Human Genetics. ,vol. 97, pp. 111- 124 ,(2015) , 10.1016/J.AJHG.2015.05.020
Amy S Gargis, Lisa Kalman, David P Bick, Cristina da Silva, David P Dimmock, Birgit H Funke, Sivakumar Gowrisankar, Madhuri R Hegde, Shashikant Kulkarni, Christopher E Mason, Rakesh Nagarajan, Karl V Voelkerding, Elizabeth A Worthey, Nazneen Aziz, John Barnes, Sarah F Bennett, Himani Bisht, Deanna M Church, Zoya Dimitrova, Shaw R Gargis, Nabil Hafez, Tina Hambuch, Fiona C L Hyland, Ruth Ann Luna, Duncan MacCannell, Tobias Mann, Megan R McCluskey, Timothy K McDaniel, Lilia M Ganova-Raeva, Heidi L Rehm, Jeffrey Reid, David S Campo, Richard B Resnick, Perry G Ridge, Marc L Salit, Pavel Skums, Lee-Jun C Wong, Barbara A Zehnbauer, Justin M Zook, Ira M Lubin, Good laboratory practice for clinical next-generation sequencing informatics pipelines Nature Biotechnology. ,vol. 33, pp. 689- 693 ,(2015) , 10.1038/NBT.3237
Adam D Ewing, Kathleen E Houlahan, Yin Hu, Kyle Ellrott, Cristian Caloian, Takafumi N Yamaguchi, J Christopher Bare, Christine P'ng, Daryl Waggott, Veronica Y Sabelnykova, ICGC-TCGA DREAM Somatic Mutation Calling, Liu Xi, Ninad Dewal, Yu Fan, Wenyi Wang, David Wheeler, Andreas Wilm, Grace Hui Ting, Chenhao Li, Denis Bertrand, Niranjan Nagarajan, Qing-Rong Chen, Chih-Hao Hsu, Ying Hu, Chunhua Yan, Warren Kibbe, Daoud Meerzaman, Kristian Cibulskis, Mara Rosenberg, Louis Bergelson, Adam Kiezun, Amie Radenbaugh, Anne-Sophie Sertier, Anthony Ferrari, Laurie Tonton, Kunal Bhutani, Nancy F Hansen, Difei Wang, Lei Song, Zhongwu Lai, Yang Liao, Wei Shi, José Carbonell-Caballero, Joaquín Dopazo, Cheryl CK Lau, Justin Guinney, Michael R Kellen, Thea C Norman, David Haussler, Stephen H Friend, Gustavo Stolovitzky, Adam A Margolin, Joshua M Stuart, Paul C Boutros, Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection. Nature Methods. ,vol. 12, pp. 623- 630 ,(2015) , 10.1038/NMETH.3407
Leslie E. Wolf, Bernard Lo, Untapped potential: IRB guidance for the ethical research use of stored biological materials. IRB: Ethics & Human Research. ,vol. 26, pp. 1- 8 ,(2004) , 10.2307/3563696
Lincoln D. Stein, Bartha M. Knoppers, Peter Campbell, Gad Getz, Jan O. Korbel, Data analysis: Create a cloud commons Nature. ,vol. 523, pp. 149- 151 ,(2015) , 10.1038/523149A
Heidi L. Rehm, Jonathan S. Berg, Lisa D. Brooks, Carlos D. Bustamante, James P. Evans, Melissa J. Landrum, David H. Ledbetter, Donna R. Maglott, Christa Lese Martin, Robert L. Nussbaum, Sharon E. Plon, Erin M. Ramos, Stephen T. Sherry, Michael S. Watson, ClinGen, None, ClinGen — The Clinical Genome Resource The New England Journal of Medicine. ,vol. 372, pp. 2235- 2242 ,(2015) , 10.1056/NEJMSR1406261
Ussha Pillai, Kathleen Phillips, Graham Wilkins, Robert C. Baxter, Diana E. Benn, Nicole R Parker, Ross C Smith, Deborah J Marsh, Factors that may influence the willingness of cancer patients to consent for biobanking. Biopreservation and Biobanking. ,vol. 12, pp. 409- 414 ,(2014) , 10.1089/BIO.2014.0039