Conformational changes in intact dengue virus reveal serotype-specific expansion

作者: Xin-Xiang Lim , Arun Chandramohan , Xin Ying Elisa Lim , Nirmalya Bag , Kamal Kant Sharma

DOI: 10.1038/NCOMMS14339

关键词:

摘要: Dengue virus serotype 2 (DENV2) alone undergoes structural expansion at 37 °C (associated with host entry), despite high sequence and homology among the four known serotypes. The basis for this differential across strains serotypes is unknown necessitates mapping of dynamics dengue whole viral particles to describe their coordinated motions conformational changes when exposed host-like environments. Here we capture intact two serotypes, DENV1 DENV2, by amide hydrogen/deuterium exchange mass spectrometry (HDXMS) time resolved Forster Resonance Energy Transfer. Our results show temperature-dependent hotspots on DENV2 showing 40 °C but not 37 °C. HDXMS measurement virion in solution offers a powerful approach identify potential epitopes, map virus-antibody complex structure dynamics, test effects multiple host-specific perturbations viruses complexes.

参考文章(44)
Richard J Kuhn, Wei Zhang, Michael G Rossmann, Sergei V Pletnev, Jeroen Corver, Edith Lenches, Christopher T Jones, Suchetana Mukhopadhyay, Paul R Chipman, Ellen G Strauss, Timothy S Baker, James H Strauss, None, Structure of dengue virus: implications for flavivirus organization, maturation, and fusion. Cell. ,vol. 108, pp. 717- 725 ,(2002) , 10.1016/S0092-8674(02)00660-8
Guntur Fibriansah, Kristie D. Ibarra, Thiam-Seng Ng, Scott A. Smith, Joanne L. Tan, Xin-Ni Lim, Justin S. G. Ooi, Victor A. Kostyuchenko, Jiaqi Wang, Aravinda M. de Silva, Eva Harris, James E. Crowe, Shee-Mei Lok, Cryo-EM structure of an antibody that neutralizes dengue virus type 2 by locking E protein dimers Science. ,vol. 349, pp. 88- 91 ,(2015) , 10.1126/SCIENCE.AAA8651
Hui Wei, Jingjie Mo, Li Tao, Reb J. Russell, Adrienne A. Tymiak, Guodong Chen, Roxana E. Iacob, John R. Engen, Hydrogen/deuterium exchange mass spectrometry for probing higher order structure of protein therapeutics: methodology and applications. Drug Discovery Today. ,vol. 19, pp. 95- 102 ,(2014) , 10.1016/J.DRUDIS.2013.07.019
Hongwei Xie, Asish Chakraborty, Joomi Ahn, Ying Qing Yu, Deepalakshmi P Dakshinamoorthy, Martin Gilar, Weibin Chen, St John Skilton, Jeffery R Mazzeo, None, Rapid comparison of a candidate biosimilar to an innovator monoclonal antibody with advanced liquid chromatography and mass spectrometry technologies mAbs. ,vol. 2, pp. 379- 394 ,(2010) , 10.4161/MABS.11986
David N. Perkins, Darryl J. C. Pappin, David M. Creasy, John S. Cottrell, Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis. ,vol. 20, pp. 3551- 3567 ,(1999) , 10.1002/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2
C. Woodward, I. Simon, E. T�chsen, Hydrogen exchange and the dynamic structure of proteins Molecular and Cellular Biochemistry. ,vol. 48, pp. 135- 160 ,(1982) , 10.1007/BF00421225
Damian Houde, Steven A. Berkowitz, John R. Engen, The Utility of Hydrogen/Deuterium Exchange Mass Spectrometry in Biopharmaceutical Comparability Studies Journal of Pharmaceutical Sciences. ,vol. 100, pp. 2071- 2086 ,(2011) , 10.1002/JPS.22432
David D. Weis, Thomas E. Wales, John R. Engen, Matthew Hotchko, Lynn F. Eyck, Identification and characterization of EX1 kinetics in H/D exchange mass spectrometry by peak width analysis. Journal of the American Society for Mass Spectrometry. ,vol. 17, pp. 1498- 1509 ,(2006) , 10.1016/J.JASMS.2006.05.014
G. Fibriansah, T.-S. Ng, V. A. Kostyuchenko, J. Lee, S. Lee, J. Wang, S.-M. Lok, Structural Changes in Dengue Virus When Exposed to a Temperature of 37°C Journal of Virology. ,vol. 87, pp. 7585- 7592 ,(2013) , 10.1128/JVI.00757-13
Xinzheng Zhang, Ju Sheng, Pavel Plevka, Richard J Kuhn, Michael S Diamond, Michael G Rossmann, None, Dengue structure differs at the temperatures of its human and mosquito hosts Proceedings of the National Academy of Sciences of the United States of America. ,vol. 110, pp. 6795- 6799 ,(2013) , 10.1073/PNAS.1304300110