Genome-wide investigation and transcriptional analysis of cytosine-5 DNA methyltransferase and DNA demethylase gene families in tea plant (Camellia sinensis) under abiotic stress and withering processing.

作者: Chen Zhu , Shuting Zhang , Chengzhe Zhou , Lan Chen , Haifeng Fu

DOI: 10.7717/PEERJ.8432

关键词:

摘要: DNA methylation is a highly conserved epigenetic modification involved in many biological processes, including growth and development, stress response, secondary metabolism. In the plant kingdom, cytosine-5 methyltransferase (C5-MTase) demethylase (dMTase) genes have been identified some species. However, to best of our knowledge, no investigator has focused on identification analysis C5-MTase dMTase tea plants (Camellia sinensis) based genome-wide levels. this study, eight CsC5-MTases four dMTases were plants. These CsC5-MTase divided into subfamilies, CsMET, CsCMT, CsDRM CsDNMT2. The CsdMTase can be classified CsROS, CsDME CsDML. Based domain these genes, gene loss duplication events occurred during evolution CsdMTase. Furthermore, multiple cis-acting elements observed CsdMTase, light responsiveness, phytohormone development-related elements. Then, we investigated transcript abundance under abiotic (cold drought) withering processing (white oolong tea). Notably, most CsC5-MTases, except for CsCMT1 CsCMT2, significantly downregulated stress, while all was induced. Similarly, same found white tea, respectively. total, findings will provide basis roles response potential functions two families affecting flavor processing.

参考文章(104)
Ana López Sánchez, Joost H.M. Stassen, Leonardo Furci, Lisa M. Smith, Jurriaan Ton, The role of DNA (de)methylation in immune responsiveness of Arabidopsis. Plant Journal. ,vol. 88, pp. 361- 374 ,(2016) , 10.1111/TPJ.13252
Yuhua Wang, Xueyi Xue, Jian-Kang Zhu, Juan Dong, Demethylation of ERECTA receptor genes by IBM1 histone demethylase affects stomatal development Development. ,vol. 143, pp. 4452- 4461 ,(2016) , 10.1242/DEV.129932
Bo Zhang, Denise M. Tieman, Chen Jiao, Yimin Xu, Kunsong Chen, Zhangjun Fei, James J. Giovannoni, Harry J. Klee, Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation Proceedings of the National Academy of Sciences of the United States of America. ,vol. 113, pp. 12580- 12585 ,(2016) , 10.1073/PNAS.1613910113
You-Jie Zhao, Li-Ping Zhang, Yun-Long Liu, Ben-Ying Liu, Yue Yu, Sheng-Fu Shao, De-Jiang Ni, Evan E. Eichler, Li-Zhi Gao, En-Hua Xia, Hai-Bin Zhang, Jun Sheng, Kui Li, Qun-Jie Zhang, Changhoon Kim, Yun Zhang, Yuan Liu, Ting Zhu, Wei Li, Hui Huang, Yan Tong, Hong Nan, Cong Shi, Chao Shi, Jian-Jun Jiang, Shu-Yan Mao, Jun-Ying Jiao, Dan Zhang, Yuan Zhao, The Tea Tree Genome Provides Insights into Tea Flavor and Independent Evolution of Caffeine Biosynthesis Molecular Plant. ,vol. 10, pp. 866- 877 ,(2017) , 10.1016/J.MOLP.2017.04.002
Gilberto Cavalheiro Vieira, Gustavo Fioravanti Vieira, Marialva Sinigaglia, Vera Lúcia da Silva Valente, Linking epigenetic function to electrostatics: The DNMT2 structural model example. PLOS ONE. ,vol. 12, ,(2017) , 10.1371/JOURNAL.PONE.0178643
Silvia Gianoglio, Andrea Moglia, Alberto Acquadro, Cinzia Comino, Ezio Portis, The genome-wide identification and transcriptional levels of DNA methyltransferases and demethylases in globe artichoke PLOS ONE. ,vol. 12, pp. e0181669- 17 ,(2017) , 10.1371/JOURNAL.PONE.0181669
Daniel Conde, Alicia Moreno-Cortés, Christopher Dervinis, José M. Ramos-Sánchez, Matias Kirst, Mariano Perales, Pablo González-Melendi, Isabel Allona, Overexpression of DEMETER, a DNA demethylase, promotes early apical bud maturation in poplar. Plant Cell and Environment. ,vol. 40, pp. 2806- 2819 ,(2017) , 10.1111/PCE.13056
Drosou Victoria, Kapazoglou Aliki, Koidou Venetia, Merkouropoulos Georgios, Hilioti Zoe, Spatial and temporal expression of cytosine-5 DNA methyltransferase and DNA demethylase gene families of the Ricinus communis during seed development and drought stress Plant Growth Regulation. ,vol. 84, pp. 81- 94 ,(2018) , 10.1007/S10725-017-0323-Y
Yulong Ye, Jingna Yan, Jilai Cui, Shihong Mao, Meifeng Li, Xueli Liao, Huarong Tong, Dynamic changes in amino acids, catechins, caffeine and gallic acid in green tea during withering Journal of Food Composition and Analysis. ,vol. 66, pp. 98- 108 ,(2018) , 10.1016/J.JFCA.2017.12.008
Lifang Sun, Xingfen Miao, Jin Cui, Jie Deng, Xia Wang, Yufeng Wang, Yifei Zhang, Shuren Gao, Kejun Yang, Genome-wide high-resolution mapping of DNA methylation identifies epigenetic variation across different salt stress in Maize ( Zea mays L.) Euphytica. ,vol. 214, pp. 1- 15 ,(2018) , 10.1007/S10681-017-2076-0