Global Analysis of Small Molecule Binding to Related Protein Targets

作者: Felix A. Kruger , John P. Overington

DOI: 10.1371/JOURNAL.PCBI.1002333

关键词:

摘要: We report on the integration of pharmacological data and homology information for a large scale analysis small molecule binding to related targets. Differences in have been assessed curated pairs human rat orthologs also recently diverged paralogs. Our shows that general, is conserved orthologs. Using statistical tests, we identified number cases where different between rat, some which had previously reported literature. Knowledge species specific pharmacology can be advantageous drug discovery, rats are frequently used as model system. For paralogs, demonstrate global correlation sequence identity molecules with equivalent affinity. findings provide an initial general relating divergence, containing foundations anticipate predict within-target-family selectivity.

参考文章(44)
John P. Overington, Bissan Al-Lazikani, Andrew L. Hopkins, How many drug targets are there Nature Reviews Drug Discovery. ,vol. 5, pp. 993- 996 ,(2006) , 10.1038/NRD2199
Diana L. Nersesian, Lawrence A. Black, Thomas R. Miller, Timothy A. Vortherms, Timothy A. Esbenshade, Arthur A. Hancock, Marlon D. Cowart, In vitro SAR of pyrrolidine-containing histamine H3 receptor antagonists: trends across multiple chemical series. Bioorganic & Medicinal Chemistry Letters. ,vol. 18, pp. 355- 359 ,(2008) , 10.1016/J.BMCL.2007.10.067
Michal Vieth, Jeffrey J. Sutherland, Daniel H. Robertson, Robert M. Campbell, Kinomics: characterizing the therapeutically validated kinase space. Drug Discovery Today. ,vol. 10, pp. 839- 846 ,(2005) , 10.1016/S1359-6446(05)03477-X
Eugene Koonin, Roman Tatusov, Michael Galperin, Mikhail Rozanov, David Lipman, A Genomic Perspective on Protein Families Science. ,vol. 278, pp. 631- 637 ,(1997) , 10.1126/SCIENCE.278.5338.631
David E. Gloriam, Steven M. Foord, Frank E. Blaney, Stephen L. Garland, Definition of the G protein-coupled receptor transmembrane bundle binding pocket and calculation of receptor similarities for drug design. Journal of Medicinal Chemistry. ,vol. 52, pp. 4429- 4442 ,(2009) , 10.1021/JM900319E
Paul R Caron, Michael D Mullican, Robert D Mashal, Keith P Wilson, Michael S Su, Mark A Murcko, Chemogenomic approaches to drug discovery Current Opinion in Chemical Biology. ,vol. 5, pp. 464- 470 ,(2001) , 10.1016/S1367-5931(00)00229-5
David Vidal, Michael Thormann, Miquel Pons, LINGO, an efficient holographic text based method to calculate biophysical properties and intermolecular similarities Journal of Chemical Information and Modeling. ,vol. 45, pp. 386- 393 ,(2005) , 10.1021/CI0496797
Andrew L. Hopkins, Colin R. Groom, Alexander Alex, Ligand efficiency: a useful metric for lead selection. Drug Discovery Today. ,vol. 9, pp. 430- 431 ,(2004) , 10.1016/S1359-6446(04)03069-7
Lawrence A. Black, Diana L. Nersesian, Padam Sharma, Yi-Yin Ku, Youssef L. Bennani, Kennan C. Marsh, Thomas R. Miller, Timothy A. Esbenshade, Arthur A. Hancock, Marlon Cowart, 4-[6-(2-Aminoethyl)naphthalen-2-yl]benzonitriles are potent histamine H3 receptor antagonists with high CNS penetration. Bioorganic & Medicinal Chemistry Letters. ,vol. 17, pp. 1443- 1446 ,(2007) , 10.1016/J.BMCL.2006.11.073