DSK: K-Mer Counting With Very Low Memory Usage

作者: G. Rizk , D. Lavenier , R. Chikhi

DOI: 10.1093/BIOINFORMATICS/BTT020

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摘要: … the execution time and memory usage of DSK with Jellyfish (version 1.1.5) and BFCounter (version 0.2) on a human genome Illumina dataset. The target disk usage of DSK was set to …

参考文章(2)
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Páll Melsted, Jonathan K Pritchard, Efficient counting of k -mers in DNA sequences using a bloom filter BMC Bioinformatics. ,vol. 12, pp. 333- 333 ,(2011) , 10.1186/1471-2105-12-333