Population structure and gene flow in the global pest, Helicoverpa armigera

作者: C. J. Anderson , W. T. Tay , A. McGaughran , K. Gordon , T. K. Walsh

DOI: 10.1111/MEC.13841

关键词:

摘要: Helicoverpa armigera is a major agricultural pest that distributed across Europe, Asia, Africa and Australasia. This species hypothesized to have spread the Americas 1.5 million years ago, founding population at present, distinct species, zea. In 2013, H. armigera was confirmed re-entered South America via Brazil subsequently spread. The source of recent incursion unknown structure in poorly resolved, but basic understanding would highlight potential biosecurity failures determine evolutionary history region-specific lineages. Here, we integrate several end points derived from high-throughput sequencing assess gene flow H. zea populations six continents. We first assemble mitochondrial genomes demonstrate phylogenetic relationship with other Heliothine lack distinction between populations. use de novo genotyping-by-sequencing whole-genome sequences aligned bacterial artificial chromosomes, levels admixture. Primarily, find Brazilian are diverse populations, strong signals European as well prevalent Asian African ancestry. also field-caught hybrid H. zea, able provide genomic support for presence conferta subspecies While among bulk remains unresolved, present distinctions pertinent future investigations threat posed by H. armigera.

参考文章(72)
H. J. Bandelt, P. Forster, A. Rohl, Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution. ,vol. 16, pp. 37- 48 ,(1999) , 10.1093/OXFORDJOURNALS.MOLBEV.A026036
Jonathan K. Pritchard, Matthew Stephens, Peter Donnelly, Inference of population structure using multilocus genotype data Genetics. ,vol. 155, pp. 945- 959 ,(2000) , 10.1093/GENETICS/155.2.945
Sriram Sankararaman, Nick Patterson, Heng Li, Svante Pääbo, David Reich, The Date of Interbreeding between Neandertals and Modern Humans PLoS Genetics. ,vol. 8, pp. e1002947- ,(2012) , 10.1371/JOURNAL.PGEN.1002947
Nick Patterson, Alkes L. Price, David Reich, Population structure and eigenanalysis PLOS Genetics. ,vol. 2, pp. 2074- 2093 ,(2006) , 10.1371/JOURNAL.PGEN.0020190
H. Li, B. Handsaker, A. Wysoker, T. Fennell, J. Ruan, N. Homer, G. Marth, G. Abecasis, R. Durbin, , The Sequence Alignment/Map format and SAMtools Bioinformatics. ,vol. 25, pp. 2078- 2079 ,(2009) , 10.1093/BIOINFORMATICS/BTP352
Julian Catchen, Paul A. Hohenlohe, Susan Bassham, Angel Amores, William A. Cresko, Stacks: an analysis tool set for population genomics Molecular Ecology. ,vol. 22, pp. 3124- 3140 ,(2013) , 10.1111/MEC.12354
Javier Prado-Martinez, Peter H Sudmant, Jeffrey M Kidd, Heng Li, Joanna L Kelley, Belen Lorente-Galdos, Krishna R Veeramah, August E Woerner, Timothy D O’connor, Gabriel Santpere, Alexander Cagan, Christoph Theunert, Ferran Casals, Hafid Laayouni, Kasper Munch, Asger Hobolth, Anders E Halager, Maika Malig, Jessica Hernandez-Rodriguez, Irene Hernando-Herraez, Kay Prüfer, Marc Pybus, Laurel Johnstone, Michael Lachmann, Can Alkan, Dorina Twigg, Natalia Petit, Carl Baker, Fereydoun Hormozdiari, Marcos Fernandez-Callejo, Marc Dabad, Michael L Wilson, Laurie Stevison, Cristina Camprubí, Tiago Carvalho, Aurora Ruiz-Herrera, Laura Vives, Marta Mele, Teresa Abello, Ivanela Kondova, Ronald E Bontrop, Anne Pusey, Felix Lankester, John A Kiyang, Richard A Bergl, Elizabeth Lonsdorf, Simon Myers, Mario Ventura, Pascal Gagneux, David Comas, Hans Siegismund, Julie Blanc, Lidia Agueda-Calpena, Marta Gut, Lucinda Fulton, Sarah A Tishkoff, James C Mullikin, Richard K Wilson, Ivo G Gut, Mary Katherine Gonder, Oliver A Ryder, Beatrice H Hahn, Arcadi Navarro, Joshua M Akey, Jaume Bertranpetit, David Reich, Thomas Mailund, Mikkel H Schierup, Christina Hvilsom, Aida M Andrés, Jeffrey D Wall, Carlos D Bustamante, Michael F Hammer, Evan E Eichler, Tomas Marques-Bonet, None, Great ape genetic diversity and population history Nature. ,vol. 499, pp. 471- 475 ,(2013) , 10.1038/NATURE12228
N.R Lovejoy, S.P Mullen, G.A Sword, R.F Chapman, R.G Harrison, Ancient trans-Atlantic flight explains locust biogeography: molecular phylogenetics of Schistocerca. Proceedings of The Royal Society B: Biological Sciences. ,vol. 273, pp. 767- 774 ,(2006) , 10.1098/RSPB.2005.3381
A. McKenna, M. Hanna, E. Banks, A. Sivachenko, K. Cibulskis, A. Kernytsky, K. Garimella, D. Altshuler, S. Gabriel, M. Daly, M. A. DePristo, The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data Genome Research. ,vol. 20, pp. 1297- 1303 ,(2010) , 10.1101/GR.107524.110
Bastien Chevreux, Thomas Pfisterer, Bernd Drescher, Albert J Driesel, Werner EG Müller, Thomas Wetter, Sándor Suhai, Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs Genome Research. ,vol. 14, pp. 1147- 1159 ,(2004) , 10.1101/GR.1917404