Label-free detection of DNA single-base mismatches using a simple reflectance-based optical technique.

作者: G. Nava , E. Ceccarello , F. Giavazzi , M. Salina , F. Damin

DOI: 10.1039/C5CP08017G

关键词:

摘要: Rapid and quantitative detection of the binding nucleic acids to surface-immobilized probes remains a challenge in many biomedical applications. We investigated hybridization set fully complementary defected 12-base long DNA oligomers by using Reflective Phantom Interface (RPI), recently developed multiplexed label-free technique. Based on simple measurement reflected light intensity, this technology enables quantify directly as it occurs surface with sensitivity 10 pg mm−2. found strong effect single-base mismatches their location kinetics equilibrium binding. In line previous studies, we that DNA–DNA is weaker than bulk. Our data indicate consequence weak nonspecific surface.

参考文章(34)
Tommaso Bellini, Roberto Cerbino, Giuliano Zanchetta, DNA-based soft phases. Topics in Current Chemistry. ,vol. 318, pp. 225- 279 ,(2011) , 10.1007/128_2011_230
Matteo Salina, Fabio Giavazzi, Roberta Lanfranco, Erica Ceccarello, Laura Sola, Marcella Chiari, Bice Chini, Roberto Cerbino, Tommaso Bellini, Marco Buscaglia, Multi-spot, label-free immunoassay on reflectionless glass Biosensors and Bioelectronics. ,vol. 74, pp. 539- 545 ,(2015) , 10.1016/J.BIOS.2015.06.064
Fidelis Manyanga, M. Todd Horne, Greg P. Brewood, Daniel J. Fish, Rebekah Dickman, Albert S. Benight, Origins of the "nucleation" free energy in the hybridization thermodynamics of short duplex DNA. Journal of Physical Chemistry B. ,vol. 113, pp. 2556- 2563 ,(2009) , 10.1021/JP809541M
Witold Filipowicz, Suvendra N. Bhattacharyya, Nahum Sonenberg, Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nature Reviews Genetics. ,vol. 9, pp. 102- 114 ,(2008) , 10.1038/NRG2290
Alexander W. Peterson, Lauren K. Wolf, Rosina M. Georgiadis, Hybridization of mismatched or partially matched DNA at surfaces. Journal of the American Chemical Society. ,vol. 124, pp. 14601- 14607 ,(2002) , 10.1021/JA0279996
Yang Gao, Lauren K Wolf, Rosina M Georgiadis, Secondary structure effects on DNA hybridization kinetics: a solution versus surface comparison Nucleic Acids Research. ,vol. 34, pp. 3370- 3377 ,(2006) , 10.1093/NAR/GKL422
Fabio Giavazzi, Matteo Salina, Roberto Cerbino, Mattia Bassi, Davide Prosperi, Erica Ceccarello, Francesco Damin, Laura Sola, Marco Rusnati, Marcella Chiari, Bice Chini, Tommaso Bellini, Marco Buscaglia, Multispot, label-free biodetection at a phantom plastic–water interface Proceedings of the National Academy of Sciences of the United States of America. ,vol. 110, pp. 9350- 9355 ,(2013) , 10.1073/PNAS.1214589110
A.B. Steel, R.L. Levicky, T.M. Herne, M.J. Tarlov, Immobilization of Nucleic Acids at Solid Surfaces: Effect of Oligonucleotide Length on Layer Assembly Biophysical Journal. ,vol. 79, pp. 975- 981 ,(2000) , 10.1016/S0006-3495(00)76351-X
A. Halperin, A. Buhot, E.B. Zhulina, Brush effects on DNA chips: thermodynamics, kinetics, and design guidelines. Biophysical Journal. ,vol. 89, pp. 796- 811 ,(2005) , 10.1529/BIOPHYSJ.105.063479
Nicholas F. Dupuis, Erik D. Holmstrom, David J. Nesbitt, Single-Molecule Kinetics Reveal Cation-Promoted DNA Duplex Formation Through Ordering of Single-Stranded Helices Biophysical Journal. ,vol. 105, pp. 756- 766 ,(2013) , 10.1016/J.BPJ.2013.05.061