The method of single-nucleotide variations detection using capillary electrophoresis and molecular beacons.

作者: Jinhui Wang , Wei Wang , Yanhong Liu , Libo Duo , Lijuan Huang

DOI: 10.1007/S11033-008-9397-Y

关键词:

摘要: We demonstrate that single-nucleotide variations in a DNA sequence can be detected using capillary electrophoresis (CE) and molecular beacons (MBs). In this method, the region surrounding site of nucleotide variation was amplified polymerase chain reaction, then hybridize PCR products with each MBs. The sequences are different at 2,044 exon interleukin (IL)-13 which to identified. Through denaturation, product became single strand hybridized completely complementary MB. MB-target duplexes were separated CE solution-based fluorescence techniques. results show reaction fluorescent response elicited from beacon perfectly DNA, but not other MB whose probe mismatched target sequence. method based on MBs is able identify discriminate genotyping SNP between homo- heteroduplexes fragments.

参考文章(25)
Penelope E. Graves, Michael Kabesch, Marilyn Halonen, Catharine J. Holberg, Mauro Baldini, Christian Fritzsch, Stephan K. Weiland, Robert P. Erickson, Erika von Mutius, Fernando D. Martinez, A cluster of seven tightly linked polymorphisms in the IL-13 gene is associated with total serum IgE levels in three populations of white children The Journal of Allergy and Clinical Immunology. ,vol. 105, pp. 506- 513 ,(2000) , 10.1067/MAI.2000.104940
Chunxia ZHAO, Guowang XU, Xianzhe SHI, Jianmei MA, Yan ZHANG, Shen LV, Qianfeng WENG, Qing YANG, Fluorescent-based Single-strand Conformation Polymorphism/Heteroduplex Capillary Electrophoretic Mutation Analysis of the P53 Gene Analytical Sciences. ,vol. 20, pp. 1001- 1005 ,(2004) , 10.2116/ANALSCI.20.1001
E. Churruca, C. Girbau, I. Martínez, E. Mateo, R. Alonso, A. Fernández-Astorga, Detection of Campylobacter jejuni and Campylobacter coli in chicken meat samples by real-time nucleic acid sequence-based amplification with molecular beacons. International Journal of Food Microbiology. ,vol. 117, pp. 85- 90 ,(2007) , 10.1016/J.IJFOODMICRO.2007.02.007
Chia-Cheng Hung, Shu-Chin Chien, Chia-Yun Lin, Chien-Hui Chang, Yin-Fei Chang, Yuh-Jyh Jong, Sung-Tsang Hsieh, Wu-Shiun Hsieh, Ming S. Liu, Win-Li Lin, Chien-Nan Lee, Yi-Ning Su, Use of multiplex PCR and CE for gene dosage quantification and its biomedical applications for SMN, PMP22, and alpha-globin genes. Electrophoresis. ,vol. 28, pp. 2826- 2834 ,(2007) , 10.1002/ELPS.200600647
Mats Nilsson, Mats Gullberg, Fredrik Dahl, Karoly Szuhai, Anton K Raap, Real‐time monitoring of rolling‐circle amplification using a modified molecular beacon design Nucleic Acids Research. ,vol. 30, ,(2002) , 10.1093/NAR/GNF065
Sanjay Tyagi, Fred Russell Kramer, Molecular Beacons: Probes that Fluoresce upon Hybridization Nature Biotechnology. ,vol. 14, pp. 303- 308 ,(1996) , 10.1038/NBT0396-303
Dmitri N. Gavrilov, Olga Kosobokova, Vyacheslav Khozikov, Andrey Stepukhovitch, Vera Gorfinkel, Electrophoresis in capillary cells with detection gap. Electrophoresis. ,vol. 26, pp. 3430- 3437 ,(2005) , 10.1002/ELPS.200500237
Julia F Hopkins, Sarah A Woodson, Molecular beacons as probes of RNA unfolding under native conditions Nucleic Acids Research. ,vol. 33, pp. 5763- 5770 ,(2005) , 10.1093/NAR/GKI877