Genome-wide Identification of the Rice Calcium-dependent Protein Kinase and its Closely Related Kinase Gene Families: Comprehensive Analysis of the CDPKs Gene Family in Rice
作者： Takayuki Asano , Naoki Tanaka , Guangxiao Yang , Nagao Hayashi , Setsuko Komatsu
DOI: 10.1093/PCP/PCI035
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摘要: In plants, calcium acts as a universal second messenger in various signal transduction pathways. The plant-specific calcium-dependent protein kinases (CDPKs) play important roles regulating downstream components of signaling. We conducted genome-wide analysis rice CDPKs and identified 29 CDPK genes eight closely related kinase genes, including five CDPK-related (CRKs), one calmodulin-dependent (CCaMK) two phosphoenolpyruvate (PEP) carboxylase kinase-related (PEPRKs). mRNA splicing sites the CDPKs, CRKs PEPRKs (but not OsCCaMK) are highly conserved, suggesting that these derived from common ancestor. RNA gel blot analyses revealed majority exhibited tissue-specific expression. Expression OsCPK9 was elevated seedlings infected by blast, indicating this gene plays an role signaling response to blast treatment. Our genomic bioinformatic will provide foundation for further functional dissection family.
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Milo Frattini, Laura Morello, Diego Breviario, Rice calcium-dependent protein kinase isoforms OsCDPK2 and OsCDPK11 show different responses to light and different expression patterns during seed development. Plant Molecular Biology. ,vol. 41, pp. 753- 764 ,(1999) , 10.1023/A:1006316422400
Chiharu Akimoto-Tomiyama, Katsumi Sakata, Junshi Yazaki, Keiko Nakamura, Fumiko Fujii, Kanako Shimbo, Kimiko Yamamoto, Takuji Sasaki, Naoki Kishimoto, Shoshi Kikuchi, Naoto Shibuya, Eiichi Minami, Rice gene expression in response to N -acetylchitooligosaccharide elicitor: comprehensive analysis by DNA microarray with randomly selected ESTs Plant Molecular Biology. ,vol. 52, pp. 537- 551 ,(2003) , 10.1023/A:1024890601888
Isabel Murillo, Estelle Jaeck, M José Cordero, Blanca San Segundo, Transcriptional activation of a maize calcium-dependent protein kinase gene in response to fungal elicitors and infection. Plant Molecular Biology. ,vol. 45, pp. 145- 158 ,(2001) , 10.1023/A:1006430707075
Zhihua Liu, Mian Xia, B.W. Poovaiah, Chimeric calcium/calmodulin-dependent protein kinase in tobacco: differential regulation by calmodulin isoforms Plant Molecular Biology. ,vol. 38, pp. 889- 897 ,(1998) , 10.1023/A:1006019001200
Michael J. Berridge, Peter Lipp, Martin D. Bootman, The versatility and universality of calcium signalling Nature Reviews Molecular Cell Biology. ,vol. 1, pp. 11- 21 ,(2000) , 10.1038/35036035
Takanori Shimokawa, Yosuke Umehara, Takuji Sasaki, Masahiro Yano, Hiroshi Tanoue, Nori Kurata, Jianzhong Wu, Physical mapping of duplicated genomic regions of two chromosome ends in rice. Genetics. ,vol. 150, pp. 1595- 1603 ,(1998) , 10.1093/GENETICS/150.4.1595
Eric Lindzen, Jung H. Choi, A carrot cDNA encoding an atypical protein kinase homologous to plant calcium-dependent protein kinases. Plant Molecular Biology. ,vol. 28, pp. 785- 797 ,(1995) , 10.1007/BF00042065
Takayuki Asano, Takehiro Masumura, Hiroaki Kusano, Shoshi Kikuchi, Akihiro Kurita, Hiroaki Shimada, Koh-ichi Kadowaki, Construction of a specialized cDNA library from plant cells isolated by laser capture microdissection: toward comprehensive analysis of the genes expressed in the rice phloem. Plant Journal. ,vol. 32, pp. 401- 408 ,(2002) , 10.1046/J.1365-313X.2002.01423.X
A.S.N. Reddy, Nuclear pre-mRNA splicing in plants Critical Reviews in Plant Sciences. ,vol. 20, pp. 523- 571 ,(2001) , 10.1080/20013591099272
J. Sheen, Ca2+-Dependent Protein Kinases and Stress Signal Transduction in Plants Science. ,vol. 274, pp. 1900- 1902 ,(1996) , 10.1126/SCIENCE.274.5294.1900