Quantitative dynamics and binding studies of the 20S proteasome by NMR

作者: Remco Sprangers , Lewis E. Kay

DOI: 10.1038/NATURE05512

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摘要: The machinery used by the cell to perform essential biological processes is made up of large molecular assemblies. One such complex, proteasome, central machine for removal damaged and misfolded proteins from cell. Here we show that 670-kilodalton 20S proteasome core particle it possible overcome weight limitations have traditionally hampered quantitative nuclear magnetic resonance (NMR) spectroscopy studies systems. This achieved using an isotope labelling scheme where isoleucine, leucine valine methyls are protonated in otherwise highly deuterated background concert with experiments preserve lifetimes resulting NMR signals. methodology has been applied reveal functionally important motions interactions recording spectra on complexes weights a megadalton. Our results establish can provide detailed insight into supra-molecular structures over order magnitude larger than those routinely studied generally applicable.

参考文章(30)
Frank G. Whitby, Eugene I. Masters, Larissa Kramer, J. Randolph Knowlton, Yi Yao, Ching C. Wang, Christopher P. Hill, Structural basis for the activation of 20S proteasomes by 11S regulators Nature. ,vol. 408, pp. 115- 120 ,(2000) , 10.1038/35040607
Chang-Wei Liu, Michael J Corboy, George N DeMartino, Philip J Thomas, Endoproteolytic Activity of the Proteasome Science. ,vol. 299, pp. 408- 411 ,(2003) , 10.1126/SCIENCE.1079293
J Lowe, D Stock, B Jap, P Zwickl, W Baumeister, R Huber, Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 A resolution. Science. ,vol. 268, pp. 533- 539 ,(1995) , 10.1126/SCIENCE.7725097
Young Do Kwon, István Nagy, Paul D Adams, Wolfgang Baumeister, Bing K Jap, Crystal structures of the Rhodococcus proteasome with and without its pro-peptides: implications for the role of the pro-peptide in proteasome assembly. Journal of Molecular Biology. ,vol. 335, pp. 233- 245 ,(2004) , 10.1016/J.JMB.2003.08.029
Anthony Mittermaier, Lewis E Kay, New Tools Provide New Insights in NMR Studies of Protein Dynamics Science. ,vol. 312, pp. 224- 228 ,(2006) , 10.1126/SCIENCE.1124964
Dmitry M. Korzhnev, Karin Kloiber, Voula Kanelis, Vitali Tugarinov, Lewis E. Kay, Probing slow dynamics in high molecular weight proteins by methyl-TROSY NMR spectroscopy: application to a 723-residue enzyme. Journal of the American Chemical Society. ,vol. 126, pp. 3964- 3973 ,(2004) , 10.1021/JA039587I
M. Salzmann, K. Pervushin, G. Wider, H. Senn, K. Wuthrich, TROSY in triple-resonance experiments: New perspectives for sequential NMR assignment of large proteins Proceedings of the National Academy of Sciences of the United States of America. ,vol. 95, pp. 13585- 13590 ,(1998) , 10.1073/PNAS.95.23.13585
Wolfgang Baumeister, Jochen Walz, Frank Zühl, Erika Seemüller, The Proteasome: Paradigm of a Self-Compartmentalizing Protease Cell. ,vol. 92, pp. 367- 380 ,(1998) , 10.1016/S0092-8674(00)80929-0
Michael Groll, Lars Ditzel, Jan Löwe, Daniela Stock, Matthias Bochtler, Hans D. Bartunik, Robert Huber, Structure of 20S proteasome from yeast at 2.4 A resolution. Nature. ,vol. 386, pp. 463- 471 ,(1997) , 10.1038/386463A0