Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains : a web-based resource

S Schumacher, R P Fuchs, M Bichara, Two distinct models account for short and long deletions within sequence repeats in Escherichia coli. Journal of Bacteriology. ,vol. 179, pp. 6512- 6517 ,(1997) , 10.1128/JB.179.20.6512-6517.1997

Philippe Le Flèche, Yolande Hauck, Lucie Onteniente, Agnès Prieur, France Denoeud, Vincent Ramisse, Patricia Sylvestre, Gary Benson, Françoise Ramisse, Gilles Vergnaud, A tandem repeats database for bacterial genomes: application to the genotyping of Yersinia pestis and Bacillus anthracis BMC Microbiology. ,vol. 1, pp. 2- 2 ,(2001) , 10.1186/1471-2180-1-2

Gary Benson, Lan Dong, Reconstructing the Duplication History of a Tandem Repeat intelligent systems in molecular biology. pp. 44- 53 ,(1999)

D. M. Adair, P. L. Worsham, K. K. Hill, A. M. Klevytska, P. J. Jackson, A. M. Friedlander, P. Keim, Diversity in a Variable-Number Tandem Repeat from Yersinia pestis Journal of Clinical Microbiology. ,vol. 38, pp. 1516- 1519 ,(2000) , 10.1128/JCM.38.4.1516-1519.2000

Philippe Le Flèche, Michel Fabre, France Denoeud, Jean-Louis Koeck, Gilles Vergnaud, High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing. BMC Microbiology. ,vol. 2, pp. 37- 37 ,(2002) , 10.1186/1471-2180-2-37

Betsy J Bricker, Darla R Ewalt, Shirley M Halling, Brucella 'HOOF-Prints': strain typing by multi-locus analysis of variable number tandem repeats (VNTRs) BMC Microbiology. ,vol. 3, pp. 15- 15 ,(2003) , 10.1186/1471-2180-3-15

Michaela M. Gutacker, Barry N. Kreiswirth, Cristi A. Lux Migliaccio, Elena Shashkina, Edward A. Graviss, Debby V. Cousins, Stacy M. Ricklefs, Su Hua, James C. Smoot, James M. Musser, Genome-wide analysis of synonymous single nucleotide polymorphisms in Mycobacterium tuberculosis complex organisms: resolution of genetic relationships among closely related microbial strains. Genetics. ,vol. 162, pp. 1533- 1543 ,(2002) , 10.1093/GENETICS/162.4.1533

Michael McClelland, Kenneth E. Sanderson, John Spieth, Sandra W. Clifton, Phil Latreille, Laura Courtney, Steffen Porwollik, Johar Ali, Mike Dante, Feiyu Du, Shunfang Hou, Dan Layman, Shawn Leonard, Christine Nguyen, Kelsi Scott, Andrea Holmes, Neenu Grewal, Elizabeth Mulvaney, Ellen Ryan, Hui Sun, Liliana Florea, Webb Miller, Tamberlyn Stoneking, Michael Nhan, Robert Waterston, Richard K. Wilson, Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 Nature. ,vol. 413, pp. 852- 856 ,(2001) , 10.1038/35101614

Wen Deng, Valerie Burland, Guy Plunkett, Adam Boutin, George F. Mayhew, Paul Liss, Nicole T. Perna, Debra J. Rose, Bob Mau, Shiguo Zhou, David C. Schwartz, Jaqueline D. Fetherston, Luther E. Lindler, Robert R. Brubaker, Gregory V. Plano, Susan C. Straley, Kathleen A. McDonough, Matthew L. Nilles, Jyl S. Matson, Frederick R. Blattner, Robert D. Perry, Genome Sequence of Yersinia pestis KIM Journal of Bacteriology. ,vol. 184, pp. 4601- 4611 ,(2002) , 10.1128/JB.184.16.4601-4611.2002

Xavier De Bolle, Christopher D. Bayliss, Dawn Field, Tamsin van de Ven, Nigel J. Saunders, Derek W. Hood, E. Richard Moxon, The length of a tetranucleotide repeat tract in Haemophilus influenzae determines the phase variation rate of a gene with homology to type III DNA methyltransferases web science. ,vol. 35, pp. 211- 222 ,(2000) , 10.1046/J.1365-2958.2000.01701.X