3D reconstruction of histological sections: Application to mammary gland tissue

作者: Ignacio Arganda‐Carreras , Rodrigo Fernández‐González , Arrate Muñoz‐Barrutia , Carlos Ortiz‐De‐Solorzano , None

DOI: 10.1002/JEMT.20829

关键词:

摘要: In this article, we present a novel method for the automatic 3D reconstruction of thick tissue blocks from 2D histological sections. The algorithm completes high-content (multiscale, multifeature) imaging system simultaneous morphological and molecular analysis samples. This computer-based integrates image acquisition, annotation, registration, three-dimensional reconstruction. We an experimental validation tool using both synthetic real data. particular, entire mouse mammary gland demonstrate integration high-resolution

参考文章(36)
C. D. Kuglin, The phase correlation image alignment method Proc. IEEE International Conference on Cybernetics and Society, 1975. pp. 163- 165 ,(1975)
Zhengyou Zhang, Point Matching for Registration of Free-Form Surfaces computer analysis of images and patterns. pp. 460- 467 ,(1993) , 10.1007/3-540-57233-3_60
Johannes Streicher, Markus A. Donat, Bernhard Strauss, Ralf Spörle, Klaus Schughart, Gerd B. Müller, Computer-based three-dimensional visualization of developmental gene expression Nature Genetics. ,vol. 25, pp. 147- 152 ,(2000) , 10.1038/75989
Ignacio Arganda-Carreras, Carlos OS Sorzano, Roberto Marabini, José María Carazo, Carlos Ortiz-de-Solorzano, Jan Kybic, None, Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization Computer Vision Approaches to Medical Image Analysis. pp. 85- 95 ,(2006) , 10.1007/11889762_8
Clement Ip, Sebastiano Banni, Elisabetta Angioni, Gianfranca Carta, John McGinley, Henry J. Thompson, David Barbano, Dale Bauman, Conjugated Linoleic Acid–Enriched Butter Fat Alters Mammary Gland Morphogenesis and Reduces Cancer Risk in Rats Journal of Nutrition. ,vol. 129, pp. 2135- 2142 ,(1999) , 10.1093/JN/129.12.2135
Irma H Russo, Jose Russo, Developmental Stage of the Rat Mammary Gland as Determinant of Its Susceptibility to 7, 12-Dimethylbenz[a]anthracene Journal of the National Cancer Institute. ,vol. 61, pp. 1439- 1449 ,(1978) , 10.1093/JNCI/61.6.1439
Johannes Streicher, Wolfgang J. Weninger, Gerd B. Müller, External marker-based automatic congruencing: A new method of 3D reconstruction from serial sections The Anatomical Record. ,vol. 248, pp. 583- 602 ,(1997) , 10.1002/(SICI)1097-0185(199708)248:4<583::AID-AR10>3.0.CO;2-L
Wolfgang Johann Weninger, Timothy Mohun, Phenotyping transgenic embryos: a rapid 3-D screening method based on episcopic fluorescence image capturing. Nature Genetics. ,vol. 30, pp. 59- 65 ,(2002) , 10.1038/NG785
Martin Čapek, Petr Brůža, Jiří Janáček, Petr Karen, Lucie Kubínová, Radomíra Vagnerová, Volume reconstruction of large tissue specimens from serial physical sections using confocal microscopy and correction of cutting deformations by elastic registration. Microscopy Research and Technique. ,vol. 72, pp. 110- 119 ,(2009) , 10.1002/JEMT.20652
Stanley Osher, James A Sethian, Fronts propagating with curvature-dependent speed: algorithms based on Hamilton-Jacobi formulations Journal of Computational Physics. ,vol. 79, pp. 12- 49 ,(1988) , 10.1016/0021-9991(88)90002-2