MuTAnT: a family of Mutator-like transposable elements targeting TA microsatellites in Medicago truncatula

作者: Krzysztof Stawujak , Michał Startek , Anna Gambin , Dariusz Grzebelus

DOI: 10.1007/S10709-015-9842-5

关键词:

摘要: Transposable elements (TEs) are mobile DNA segments, abundant and dynamic in plant genomes. Because their mobility can be potentially deleterious to the host, a variety of mechanisms evolved limiting that negative impact, one them being preference for specific target insertion site. Here, we describe family Mutator-like transposons Medicago truncatula targeting TA microsatellites. We identified 218 copies MuTAnTs an element carrying complete ORF encoding mudrA-like transposase. Most sites flanked by variable number tandem repeats, indicating specifically Other TE families repeats (e.g. TAFT maize) were described previously, however first putative autonomous sharing characteristics with related group short non-autonomous transposons.

参考文章(52)
Alan H. Schulman, Pushpendra K. Gupta, Rajeev K. Varshney, Organization of retrotransposons and microsatellites in cereal genomes Springer Netherlands. pp. 83- 118 ,(2004) , 10.1007/1-4020-2359-6_4
Candace S. Waddell, Aaron J. Windsor, FARE, a new family of foldback transposons in Arabidopsis. Genetics. ,vol. 156, pp. 1983- 1995 ,(2000) , 10.1093/GENETICS/156.4.1983
Tomasz Gambin, Michał Startek, Krzysztof Walczak, Jarosław Paszek, Dariusz Grzebelus, Anna Gambin, TIRfinder: A Web Tool for Mining Class II Transposons Carrying Terminal Inverted Repeats Evolutionary Bioinformatics. ,vol. 9, pp. 17- 27 ,(2013) , 10.4137/EBO.S10619
Dariusz Grzebelus, Mirosława Gładysz, Alicja Macko-Podgórni, Tomasz Gambin, Barbara Golis, Roksana Rakoczy, Anna Gambin, Population dynamics of miniature inverted-repeat transposable elements (MITEs) in Medicago truncatula Gene. ,vol. 448, pp. 214- 220 ,(2009) , 10.1016/J.GENE.2009.06.004
Q. Wang, H. K. Dooner, Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 103, pp. 17644- 17649 ,(2006) , 10.1073/PNAS.0603080103
P Smýkal, R Kalendar, R Ford, J Macas, M Griga, Evolutionary conserved lineage of Angela -family retrotransposons as a genome-wide microsatellite repeat dispersal agent Heredity. ,vol. 103, pp. 157- 167 ,(2009) , 10.1038/HDY.2009.45
Susan Young, Dynamo maker ready to roll Nature. ,vol. 480, pp. 162- 163 ,(2011) , 10.1038/480162A