A novel heavy domain antibody library with functionally optimized complementarity determining regions.

作者: Ole Aalund Mandrup , Niels Anton Friis , Simon Lykkemark , Jesper Just , Peter Kristensen

DOI: 10.1371/JOURNAL.PONE.0076834

关键词:

摘要: Today a number of synthetic antibody libraries different formats have been created and used for the selection large recombinant antibodies. One determining factors successful isolation antibodies from lies in quality i.e. correctly folded, functional contained library. Here, we describe construction novel, high quality, single domain library dubbed Predator. The is based on HEL4 with addition recently reported mutations concerning amino acid composition at positions critical folding characteristics aggregation propensities As unique feature, CDR3 was designed to mimic natural human immune response by designating acids known be prevalent diversity CDR3. CDR randomizations were performed using trinucleotide synthesis avoid presence stop codons. Furthermore novel cycle free elongation method conversion synthesized stranded DNA containing randomized CDRs into double In modular approach has adopted scaffold which each region flanked restrictions sites, allowing easy affinity maturation selected clones shuffling. To validate library, one round phage display selections purified antigens highly complex antigen mixtures such as cultured eukaryotic cells resulting several specific binders. further characterization some clones, however, indicates reduction thermodynamic stability caused inclusion additional scaffold.

参考文章(46)
James D. Marks, Andrew Bradbury, Selection of human antibodies from phage display libraries. Methods of Molecular Biology. ,vol. 248, pp. 161- 176 ,(2004) , 10.1385/1-59259-666-5:161
Carlos F. Barbas, Phage Display: A Laboratory Manual ,(2004)
Andrew D Griffiths, Samuel C Williams, Oliver Hartley, Ian M Tomlinson, Peter Waterhouse, William L Crosby, Roland E Kontermann, Peter T Jones, Nigel M Low, T John Allison, Terence D Prospero, Hennie R Hoogenboom, Ahuva Nissim, Jonathan PL Cox, Jacqueline L Harrison, Manuela Zaccolo, Ermanno Gherardi, Greg Winter, Isolation of high affinity human antibodies directly from large synthetic repertoires. The EMBO Journal. ,vol. 13, pp. 3245- 3260 ,(1994) , 10.1002/J.1460-2075.1994.TB06626.X
Laurent Jespers, Oliver Schon, Leo C. James, Dmitri Veprintsev, Greg Winter, Crystal structure of HEL4, a soluble, refoldable human V(H) single domain with a germ-line scaffold. Journal of Molecular Biology. ,vol. 337, pp. 893- 903 ,(2004) , 10.1016/J.JMB.2004.02.013
Stefan Ewert, Christian Cambillau, Katja Conrath, Andreas Plückthun, Biophysical Properties of Camelid VHH Domains Compared to Those of Human VH3 Domains Biochemistry. ,vol. 41, pp. 3628- 3636 ,(2002) , 10.1021/BI011239A
Michael Hust, Stefan Dübel, Mating antibody phage display with proteomics Trends in Biotechnology. ,vol. 22, pp. 8- 14 ,(2004) , 10.1016/J.TIBTECH.2003.10.011
Carol M Y Lee, Niccolo Iorno, Frederic Sierro, Daniel Christ, Selection of human antibody fragments by phage display Nature Protocols. ,vol. 2, pp. 3001- 3008 ,(2007) , 10.1038/NPROT.2007.448
Shohei Koide, Sachdev S. Sidhu, The importance of being tyrosine: lessons in molecular recognition from minimalist synthetic binding proteins. ACS Chemical Biology. ,vol. 4, pp. 325- 334 ,(2009) , 10.1021/CB800314V