Epidemic predictions in an imperfect world: modelling disease spread with partial data

作者: Peter M. Dawson , Marleen Werkman , Ellen Brooks-Pollock , Michael J. Tildesley

DOI: 10.1098/RSPB.2015.0205

关键词:

摘要: ‘Big-data’ epidemic models are being increasingly used to influence government policy help with control and eradication of infectious diseases. In the case livestock, detailed movement records have been parametrize realistic transmission models. While livestock data readily available in UK other countries EU, many around world, such not available. By using a comprehensive database cattle trade network, we implement various sampling strategies determine quantity network required give accurate epidemiological predictions. It is found that by targeting nodes highest number movements, predictions on size spatial spread epidemics can be made. This work has implications for as USA, where access limited, developing may lack resources collect full dataset movements.

参考文章(49)
J. C. Gibbens, J. W. Wilesmith, C. E. Sharpe, L. M. Mansley, E. Michalopoulou, J. B. M. Ryan, M. Hudson, Descriptive epidemiology of the 2001 foot-and-mouth disease epidemic in Great Britain: the first five months. Veterinary Record. ,vol. 149, pp. 729- 743 ,(2001) , 10.1136/VR.149.24.729
Michele Tizzoni, Paolo Bajardi, Adeline Decuyper, Guillaume Kon Kam King, Christian M. Schneider, Vincent Blondel, Zbigniew Smoreda, Marta C. González, Vittoria Colizza, On the Use of Human Mobility Proxies for Modeling Epidemics PLoS Computational Biology. ,vol. 10, pp. e1003716- 15 ,(2014) , 10.1371/JOURNAL.PCBI.1003716
S.E. Robinson, R.M. Christley, Exploring the role of auction markets in cattle movements within Great Britain. Preventive Veterinary Medicine. ,vol. 81, pp. 21- 37 ,(2007) , 10.1016/J.PREVETMED.2007.04.011
Marta C. González, César A. Hidalgo, Albert-László Barabási, Understanding individual human mobility patterns Nature. ,vol. 453, pp. 779- 782 ,(2008) , 10.1038/NATURE06958
A. Ortiz-Pelaez, D.U. Pfeiffer, R.J. Soares-Magalhães, F.J. Guitian, Use of social network analysis to characterize the pattern of animal movements in the initial phases of the 2001 foot and mouth disease (FMD) epidemic in the UK Preventive Veterinary Medicine. ,vol. 76, pp. 40- 55 ,(2006) , 10.1016/J.PREVETMED.2006.04.007
Matt J Keeling, Mark EJ Woolhouse, Darren J Shaw, Louise Matthews, Margo Chase-Topping, Dan T Haydon, Stephen J Cornell, Jens Kappey, John Wilesmith, Bryan T Grenfell, Dynamics of the 2001 UK Foot and Mouth Epidemic: Stochastic Dispersal in a Heterogeneous Landscape Science. ,vol. 294, pp. 813- 817 ,(2001) , 10.1126/SCIENCE.1065973
R. S. Morris, M. W. Stern, M. A. Stevenson, J. W. Wilesmith, R. L. Sanson, Predictive spatial modelling of alternative control strategies for the foot-and-mouth disease epidemic in Great Britain, 2001. Veterinary Record. ,vol. 149, pp. 137- 144 ,(2001) , 10.1136/VR.149.5.137
Xu-Sheng Zhang, Margo E. Chase-Topping, Iain J. McKendrick, Nicholas J. Savill, Mark E.J. Woolhouse, Spread of E. coli O157 infection among Scottish cattle farms: Stochastic models and model selection Epidemics. ,vol. 2, pp. 11- 20 ,(2010) , 10.1016/J.EPIDEM.2010.02.001
Ellen Brooks-Pollock, Gareth O. Roberts, Matt J. Keeling, A dynamic model of bovine tuberculosis spread and control in Great Britain Nature. ,vol. 511, pp. 228- 231 ,(2014) , 10.1038/NATURE13529