An Eight-Parent Multiparent Advanced Generation Inter-Cross Population for Winter-Sown Wheat: Creation, Properties, and Validation

作者: I. J. Mackay , P. Bansept-Basler , T. Barber , A. R. Bentley , J. Cockram

DOI: 10.1534/G3.114.012963

关键词:

摘要: MAGIC populations represent one of a new generation crop genetic mapping resources combining high recombination and diversity. We describe the creation validation an eight-parent population consisting 1091 F7 lines winter-sown wheat (Triticum aestivum L.). Analyses based on genotypes from 90,000-single nucleotide polymorphism (SNP) array find to be well-suited as platform for fine-mapping quantitative trait loci (QTL) gene isolation. Patterns linkage disequilibrium (LD) show highly recombined; marker diversity among founders was 74% that captured in larger set 64 varieties, 54% SNPs segregating also segregated eight founder lines. In contrast, commonly used reference bi-parental had only varieties with 27% segregating. demonstrate potential this resource by identifying diagnostic morphological character "awn presence/absence" independently validate it association-mapping panel. These analyses large, diverse, recombined powerful dissection target traits wheat, is well-placed efficiently exploit ongoing advances phenomics genomics. Genetic data, together instructions access seed, are available at http://www.niab.com/MAGIC/.

参考文章(30)
H. S. Bariana, N. Parry, I. R. Barclay, R. Loughman, R. J. McLean, M. Shankar, R. E. Wilson, N. J. Willey, M. Francki, Identification and characterization of stripe rust resistance gene Yr34 in common wheat Theoretical and Applied Genetics. ,vol. 112, pp. 1143- 1148 ,(2006) , 10.1007/S00122-006-0216-3
Colin Cavanagh, Matthew Morell, Ian Mackay, Wayne Powell, From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants. Current Opinion in Plant Biology. ,vol. 11, pp. 215- 221 ,(2008) , 10.1016/J.PBI.2008.01.002
Paula X. Kover, William Valdar, Joseph Trakalo, Nora Scarcelli, Ian M. Ehrenreich, Michael D. Purugganan, Caroline Durrant, Richard Mott, A Multiparent Advanced Generation Inter-Cross to Fine-Map Quantitative Traits in Arabidopsis thaliana PLOS Genetics. ,vol. 5, ,(2009) , 10.1371/JOURNAL.PGEN.1000551
David Hall, Carolina Tegström, Pär K Ingvarsson, None, Using association mapping to dissect the genetic basis of complex traits in plants Briefings in Functional Genomics. ,vol. 9, pp. 157- 165 ,(2010) , 10.1093/BFGP/ELP048
Kiyoaki Kato, Hideho Miura, Masayo Akiyama, Manabu Kuroshima, Souhei Sawada, RFLP mapping of the three major genes, Vrn1, Q and B1, on the long arm of chromosome 5A of wheat Euphytica. ,vol. 101, pp. 91- 95 ,(1998) , 10.1023/A:1018372231063
RA McIntosh, Y Yamazaki, J Dubcovsky, J Rogers, C Morris, R Appels, XC ed Xia, Catalogue of gene symbols for wheat International Wheat Genetics Symposium. ,vol. 4, ,(1998)
Bevan E Huang, Andrew W George, Kerrie L Forrest, Andrzej Kilian, Matthew J Hayden, Matthew K Morell, Colin R Cavanagh, None, A multiparent advanced generation inter-cross population for genetic analysis in wheat Plant Biotechnology Journal. ,vol. 10, pp. 826- 839 ,(2012) , 10.1111/J.1467-7652.2012.00702.X
Theresa M. Fulton, Julapark Chunwongse, Steven D. Tanksley, Microprep protocol for extraction of DNA from tomato and other herbaceous plants Plant Molecular Biology Reporter. ,vol. 13, pp. 207- 209 ,(1995) , 10.1007/BF02670897
Marco Scutari, Phil Howell, David J. Balding, Ian Mackay, Multiple Quantitative Trait Analysis Using Bayesian Networks Genetics. ,vol. 198, pp. 129- 137 ,(2014) , 10.1534/GENETICS.114.165704
J. Cockram, J. White, D. L. Zuluaga, D. Smith, J. Comadran, M. Macaulay, Z. Luo, M. J. Kearsey, P. Werner, D. Harrap, C. Tapsell, H. Liu, P. E. Hedley, N. Stein, D. Schulte, B. Steuernagel, D. F. Marshall, W. T. B. Thomas, L. Ramsay, I. Mackay, D. J. Balding, R. Waugh, D. M. O'Sullivan, C. Booer, S. Pike, G. Hamilton, G. Jellis, N. Davies, A. Ross, P. Bury, R. Habgood, S. Klose, D. Vequaud, T. Christerson, J. Brosnan, A. Newton, J. Russell, P. Shaw, R. Bayles, M. Wang, , , Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome. Proceedings of the National Academy of Sciences of the United States of America. ,vol. 107, pp. 21611- 21616 ,(2010) , 10.1073/PNAS.1010179107