The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum).

作者: Elizabeth Pierce , Gary Xie , Ravi D Barabote , Elizabeth Saunders , Cliff S Han

DOI: 10.1111/J.1462-2920.2008.01679.X

关键词:

摘要: Summary This paper describes the genome sequence of M. thermoacetica (f. Clostridium thermoaceticum), which is model acetogenic bacterium that has been widely used for elucidating WoodLjungdahl pathway CO and CO2 fixation. pathway, also known as reductive acetyl-CoA allows (often called homoacetogenic) bacteria to convert glucose stoichiometrically into three mol acetate grow autotrophically using H2 electron donors an acceptor. Methanogenic archaea use this in reverse by converting methane CO2. Acetogenic couple Wood-Ljungdahl a variety other pathways allow metabolism wide carbon sources (sugars, carboxylic acids, alcohols, aromatic compounds) acceptors (CO2, nitrate, nitrite, thiosulfate, dimethylsulfoxide, carboxyl groups). The consists single circular 2628784 bp chromosome encoding 2615 open reading frames, includes 2523 predicted protein-encoding genes. Of these, 1834 genes (70.13%) have assigned tentative functions, 665 (25.43%) matched unknown function, remaining 24 (0.92%) had no database match. Two thousand hundred eighty-four (91.17%) ORFs can be grouped ortholog clusters. first provides important information related how acetogens engage their extreme metabolic diversity switching among different substrates donors/acceptors they conserve energy anaerobic respiration. Our analysis indicates key genetic trait homoacetogenesis core acs gene cluster pathway.

参考文章(146)
Harold L. Drake, Kirsten Küsel, Carola Matthies, Ecological consequences of the phylogenetic and physiological diversities of acetogens. Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. ,vol. 81, pp. 203- 213 ,(2002) , 10.1023/A:1020514617738
John A. Breznak, Acetogenesis from Carbon Dioxide in Termite Guts Springer, Boston, MA. pp. 303- 330 ,(1994) , 10.1007/978-1-4615-1777-1_11
W. E. O’Brien, J. M. Brewer, Lars G. Ljungdahl, Chemical, physical and enzymatic comparisons of formyltetrahydrofolate synthetases from thermo- and mesophilic Clostridia. Experientia. Supplementum. ,vol. 26, pp. 249- 262 ,(1976) , 10.1007/978-3-0348-7675-9_21
Lars G. Ljungdahl, Jan R. Andreesen, Formate dehydrogenase, a selenium--tungsten enzyme from Clostridium thermoaceticum. Methods in Enzymology. ,vol. 53, pp. 360- 372 ,(1978) , 10.1016/S0076-6879(78)53042-5
L L Lundie, H L Drake, Development of a minimally defined medium for the acetogen Clostridium thermoaceticum. Journal of Bacteriology. ,vol. 159, pp. 700- 703 ,(1984) , 10.1128/JB.159.2.700-703.1984
Masatoshi Nei, Sudhir Kumar, None, Molecular Evolution and Phylogenetics ,(2000)
Z L Boynton, G N Bennett, F B Rudolph, Cloning, sequencing, and expression of genes encoding phosphotransacetylase and acetate kinase from Clostridium acetobutylicum ATCC 824. Applied and Environmental Microbiology. ,vol. 62, pp. 2758- 2766 ,(1996) , 10.1128/AEM.62.8.2758-2766.1996
J E Clark, L G Ljungdahl, Purification and properties of 5,10-methenyltetrahydrofolate cyclohydrolase from Clostridium formicoaceticum. Journal of Biological Chemistry. ,vol. 257, pp. 3833- 3836 ,(1982) , 10.1016/S0021-9258(18)34857-9