Characterization of Dye-decolorizing Peroxidase (DyP) from Thermomonospora curvata Reveals Unique Catalytic Properties of A-type DyPs

作者: Chao Chen , Ruben Shrestha , Kaimin Jia , Philip F. Gao , Brian V. Geisbrecht

DOI: 10.1074/JBC.M115.658807

关键词:

摘要: Dye-decolorizing peroxidases (DyPs) comprise a new family of heme peroxidases, which has received much attention due to their potential applications in lignin degradation. A DyP from Thermomonospora curvata (TcDyP) was identified and characterized. Unlike other A-type enzymes, TcDyP is highly active toward wide range substrates including model compounds, the catalytic efficiency with ABTS (kcatapp/Kmapp = (1.7 × 107) m−1 s−1) close that fungal DyPs. Stopped-flow spectroscopy employed elucidate transient intermediates as well cycle involving wild-type (wt) mutant TcDyPs. Although residues Asp220 Arg327 are found necessary for compound I formation, His312 proposed play roles II reduction. Transient kinetics hydroquinone (HQ) oxidation by wt-TcDyP showed conversion resting state rate-limiting step, will explain contradictory observation made aspartate mutants Moreover, replacement significant effects on oligomerization redox (E°′) enzyme. Both were promote formation dimeric shift E°′ more negative potential. Not only do these results reveal unique property DyPs, but they also facilitate development enzymes degraders.

参考文章(72)
Reiner Michael Kroppenstedt, Michael Goodfellow, The Family Thermomonosporaceae: Actinocorallia, Actinomadura, Spirillospora and Thermomonospora Springer New York. pp. 682- 724 ,(2006) , 10.1007/0-387-30743-5_27
Eric Strittmatter, Dietmar A Plattner, Klaus Piontek, Dye‐Decolorizing Peroxidase (DyP) Encyclopedia of Inorganic and Bioinorganic Chemistry. pp. 1- 13 ,(2014) , 10.1002/9781119951438.EIBC2276
T.C. McIlvaine, A BUFFER SOLUTION FOR COLORIMETRIC COMPARISON Journal of Biological Chemistry. ,vol. 49, pp. 183- 186 ,(1921) , 10.1016/S0021-9258(18)86000-8
Kalidip Choudhury, Munirathiram Sundaramoorthy, Alison Hickman, Takashi Yonetani, Eilika Woehl, Michael F Dunn, Thomas L Poulos, Role of the proximal ligand in peroxidase catalysis. Crystallographic, kinetic, and spectral studies of cytochrome c peroxidase proximal ligand mutants. Journal of Biological Chemistry. ,vol. 269, pp. 20239- 20249 ,(1994) , 10.1016/S0021-9258(17)31982-8
I.C. Kuan, K.A. Johnson, M Tien, Kinetic analysis of manganese peroxidase: the reaction with manganese complexes Journal of Biological Chemistry. ,vol. 268, pp. 20064- 20070 ,(1993) , 10.1016/S0021-9258(20)80694-2
Alexander N. P. Hiner, Jesús I. Martínez, Marino B. Arnao, Manuel Acosta, Daniel D. Turner, Emma Lloyd Raven, José Neptuno Rodríguez-López, Detection of a tryptophan radical in the reaction of ascorbate peroxidase with hydrogen peroxide FEBS Journal. ,vol. 268, pp. 3091- 3098 ,(2001) , 10.1046/J.1432-1327.2001.02208.X
Gregory R. Schonbaum, Siu Lo, Interaction of Peroxidases with Aromatic Peracids and Alkyl Peroxides Journal of Biological Chemistry. ,vol. 247, pp. 3353- 3360 ,(1972) , 10.1016/S0021-9258(19)45252-6
Y Mino, H Wariishi, N J Blackburn, T M Loehr, M H Gold, Spectral characterization of manganese peroxidase, an extracellular heme enzyme from the lignin-degrading basidiomycete, Phanerochaete chrysosporium. Journal of Biological Chemistry. ,vol. 263, pp. 7029- 7036 ,(1988) , 10.1016/S0021-9258(18)68599-0
Jose Neptuno Rodriguez-Lopez, Andrew T. Smith, Roger N. F. Thorneley, Role of Arginine 38 in Horseradish Peroxidase A CRITICAL RESIDUE FOR SUBSTRATE BINDING AND CATALYSIS Journal of Biological Chemistry. ,vol. 271, pp. 4023- 4030 ,(1996) , 10.1074/JBC.271.8.4023